Vibrio parahaemolyticus TJA114 |
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Putative Vibrio parahaemolyticus TJA114 RM systems
Ref: Zhang,X. unpublished
REBASE ref # 24887
| Sequence length: | GenBank #: | |
| chromosome 1: | 1,810,082 bp | CP060087 |
| chromosome 2: | 3,522,430 bp | CP060088 |
| plasmid p114-1: | 120,965 bp | CP060089 |
REBASE acronym: Vpa114
Org_num: 44271
All begin H5404_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 2 | ||||
| 9830 | 331 aa hypothetical protein | |||
| 9835 | S | S.Vpa0605ORF19240P (100% identity) | GAAYNNNNNNNATGC | S.Vpa114ORF9840P |
| 9840 | M | M.Vpa0605ORF19240P (100% identity) | GAAYNNNNNNNATGC | M.Vpa114ORF9840P |
| 9845 | 132 aa hypothetical protein | |||
| 9850 | 49 aa hypothetical protein | |||
| 9855 | elongation factor Ts | |||
| 9860 | site-specific DNA-methyltransferase | |||
| 9865 | R | Vpa0605ORF19240P (100% identity) | GAAYNNNNNNNATGC | Vpa114ORF9840P |
| 9870 | MarR family transcriptional regulator | |||
| 13535 | 656 aa hypothetical protein | |||
| 13540 | M | M.HcaLS21ORF5100P (72% identity) | M.Vpa114ORF13540P | |
| 13545 | S | S2.Vsp43136ORF16085P (57% identity) | S.Vpa114ORF13540P | |
| 13550 | HrgA protein | |||
| 13555 | DUF262 domain-containing protein | |||
| 13560 | R | Ego125ORFIP (53% identity) | Vpa114ORF13540P | |
| 13565 | anti-phage defense ZorAB system ZorA | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 2900 | 759 aa hypothetical protein | |||
| 2905 | M | M.VpaTJ187ORF22990P (100% identity) | M.Vpa114ORF2905P | |
| 2910 | 89 aa hypothetical protein | |||
| chromosome 2 | ||||
| 9855 | elongation factor Ts | |||
| 9860 | M | M.Vpa0605ORF19210P (94% identity) | M.Vpa114ORF9860P | |
| 9865 | DEAD/DEAH box helicase family protein | |||
| 11165 | AIPR family protein | |||
| 11170 | M | M.Vzh62784ORFIP (92% identity) | M.Vpa114ORF11170P | |
| 11175 | tyrosine-type recombinase/integrase | |||
| 11300 | recombinase family protein | |||
| 11305 | R | Vpa0011ORF13485P (100% identity) | Vpa114ORF11310P | |
| 11310 | M | M.Vpa0011ORF13485P (99% identity) | M.Vpa114ORF11310P | |
| 11315 | 805 aa hypothetical protein | |||
| 18055 | 50 aa hypothetical protein | |||
| 18060 | M | M.Vha21FLORF24295P (90% identity) | M.Vpa114ORF18060P | |
| 18065 | R | Vha21FLORF24295P (95% identity) | Vpa114ORF18060P | |
| 18070 | 106 aa hypothetical protein | |||
| 18500 | 90 aa hypothetical protein | |||
| 18505 | M | M.VpaTJ187ORF22990P (97% identity) | M.Vpa114ORF18505P | |
| 18510 | phage tail tape measure protein | |||
| 22535 | ribulose-phosphate 3-epimerase | |||
| 22540 | M | M.VphVPD14DamP (100% identity) | GATC | M.Vpa114DamP |
| 22545 | AAA family ATPase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid p114-1 | ||||
| 24790 | transcription factor | |||
| 24795 | M | M.VphR14ORF25980P (100% identity) | M.Vpa114ORF24795P | |
| 24800 | R | VphR14ORF25980P (100% identity) | Vpa114ORF24795P | |
| 24805 | mobile mystery protein B | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 2 | ||||
| 11235 | AlpA family phage regulatory protein | |||
| 11240 | R | ValV208MrrP (100% identity) | Vpa114Mrr2P | |
| 11245 | abortive infection family protein | |||
| 24230 | type VI secretion system tip protein VgrG | |||
| 24235 | R | Vhaf10MrrP (97% identity) | Vpa114MrrP | |
| 24240 | 149 aa hypothetical protein | |||