Campylobacter upsaliensis FDAARGOS_736 |
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Putative Campylobacter upsaliensis FDAARGOS_736 RM systems
Ref: Turner,S. et al. unpublished
REBASE ref # 30428
Complete sequence: 1,582,381 bp
GenBank #: CP059682
REBASE acronym: Cup736
Org_num: 43886
All begin FOC44_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 25 | 239 aa hypothetical protein | |||
| 30 | M | M.Cup6824ORF6445P (97% identity) | M.Cup736ORF30P | |
| 35 | S | S1.Cup6824ORF6445P (96% identity) | S1.Cup736ORF30P | |
| 40 | S | S.Hwi435ORF2180P (27% identity) | S2.Cup736ORF30P | |
| 45 | 483 aa hypothetical protein | |||
| 1220 | Tol-Pal system protein TolB | |||
| 1225 | M | M.Cup21ORF1477P (100% identity) | M.Cup736ORF1225P | |
| 1230 | R | Cup21ORF1477P (100% identity) | Cup736ORF1225P | |
| 1235 | S | S.Cup21ORF1477P (99% identity) | S.Cup736ORF1225P | |
| 1240 | TonB C-terminal domain-containing protein | |||
| 3115 | 16S rRNA (guanine(527)-N(7))-methyltransferase | |||
| 3120 | R | Cup6824ORF1355P (99% identity) | Cup736ORF3125P | |
| 3125 | M | M.Cup14913ORF294P (98% identity) | M.Cup736ORF3125P | |
| 3130 | 90 aa hypothetical protein | |||
| 3135 | 61 aa hypothetical protein | |||
| 3140 | S | S.Cup197059ORF320P (75% identity) | S.Cup736ORF3125P | |
| 3145 | argininosuccinate synthase | |||
| 6765 | UDP-N-acetylmuramate--L-alanine ligase | |||
| 6770 | R | Cup14913ORF1062P (92% identity) | Cup736ORF6795P | |
| 6775 | 319 aa hypothetical protein | |||
| 6780 | S | S.Hwi2049ORF4525P (94% identity) | S.Cup736ORF6795P | |
| 6785 | Fic family protein | |||
| 6790 | 63 aa hypothetical protein | |||
| 6795 | M | M.Cup3940ORF1056P (98% identity) | M.Cup736ORF6795P | |
| 6805 | 190 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 155 | imidazole glycerol phosphate synthase subunit | |||
| 160 | M | M.Cup3940ORF1363P (92% identity) | M.Cup736ORF160P | |
| 165 | R | Cup3940ORF1363P (100% identity) | Cup736ORF160P | |
| 170 | bifunctional | |||
| 1475 | N-acetyl-gamma-glutamyl-phosphate reductase | |||
| 1480 | R | Cup3940ORF1626P (100% identity) | Cup736ORF1485P | |
| 1485 | M | M1.Cup3940ORF1626P (100% identity) | M1.Cup736ORF1485P | |
| 1490 | M | M2.Cup3940ORF1626P (99% identity) | M2.Cup736ORF1485P | |
| 1495 | DNA adenine methylase | |||
| 1490 | DNA adenine methylase | |||
| 1495 | M | M.Cup14913ORF1672P (97% identity) | M.Cup736ORF1495P | |
| 1500 | cell surface protein | |||
| 1540 | type I DNA topoisomerase | |||
| 1545 | M | M.Cup21ORF1543P (100% identity) | M.Cup736ORF1545P | |
| 1550 | 151 aa hypothetical protein | |||
| 1555 | glutamate synthase large subunit | |||
| 1560 | M | M.Cup21ORF1546P (98% identity) | M.Cup736ORF1560P | |
| 1565 | R | Cup21ORF1546P (100% identity) | Cup736ORF1560P | |
| 1570 | glutamate synthase subunit beta | |||
| 1580 | rRNA pseudouridine synthase | |||
| ??? | M | M1.Cup6824ORF7990P (100% identity) | M1.Cup736ORF1585P | |
| 1590 | M | M2.Cup6824ORF7990P (100% identity) | M2.Cup736ORF1585P | |
| 1595 | R | Cup6824ORF7990P (100% identity) | Cup736ORF1585P | |
| 1600 | crossover junction endodeoxyribonuclease RuvC | |||
| 4215 | 232 aa hypothetical protein | |||
| 4220 | M | M.Cup3940ORF551P (100% identity) | M.Cup736ORF4220P | |
| 4225 | ABC transporter permease | |||
| 4515 | succinyl-diaminopimelate desuccinylase | |||
| 4520 | RM | Cup3940ORF610P (91% identity) | Cup736ORF4520P | |
| 4525 | 288 aa hypothetical protein | |||
| 5045 | 172 aa hypothetical protein | |||
| 5050 | R | Cup3940ORF716P (100% identity) | Cup736ORF5055P | |
| 5055 | M | M.Cup3940ORF716P (98% identity) | M.Cup736ORF5055P | |
| 5060 | substrate-binding domain-containing protein | |||
| 5315 | 204 aa hypothetical protein | |||
| 5320 | RM | Cup6824ORF3545P (98% identity) | Cup736ORF5320P | |
| 5325 | restriction endonuclease subunit S | |||
| 6190 | ribbon-helix-helix domain-containing protein | |||
| 6195 | RM | Cup6824ORF4425P (99% identity) | Cup736ORF6195P | |
| 6200 | glycerophosphodiester phosphodiesterase | |||
| 6590 | 471 aa hypothetical protein | |||
| ??? | M | M.Cup3940ORF1016P (99% identity) | M.Cup736ORF6595P | |
| 6600 | R | Cup3940ORF1016P (100% identity) | Cup736ORF6595P | |
| 6605 | prephenate dehydratase | |||
| 7660 | 2-amino-4-hydroxy-6- | |||
| 7665 | R | Cup6824ORF5895P (50% identity) | Cup736ORF7675P | |
| 7675 | M | M.Cup6824ORF5895P (97% identity) | M.Cup736ORF7675P | |
| 7680 | DNA polymerase I | |||
| 7765 | N-methyl-L-tryptophan oxidase | |||
| ??? | M | M.Cup6824ORF5990P (99% identity) | M.Cup736ORF7770P | |
| 7775 | R | Cup3940ORF1248P (100% identity) | Cup736ORF7770P | |
| 7780 | DUF262 domain-containing protein | |||
| 7865 | ABC transporter ATP-binding protein | |||
| 7870 | M | M.Cup6824ORF6090P (100% identity) | M.Cup736ORF7870P | |
| 7875 | 616 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1970 | sodium:proton antiporter | |||
| 1975 | R | Cup14913ORF75P (99% identity) | Cup736ORF1980P | |
| 1980 | M | M.Cup3940ORF72P (100% identity) | M.Cup736ORF1980P | |
| 1985 | SPASM domain-containing protein | |||
| 4080 | 247 aa hypothetical protein | |||
| ??? | R | Cup3940ORF526P (99% identity) | Cup736ORF4090P | |
| ??? | M | M.CupORF798AP (65% identity) | M.Cup736ORF4090P | |
| 4100 | lipid-A-disaccharide synthase | |||