Escherichia coli RHB08-C16 |
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Putative Escherichia coli RHB08-C16 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 5,213,353 bp | CP057959 |
| plasmid pRHB08-C16_2: | 128,235 bp | CP057960 |
REBASE acronym: Eco08C16
Org_num: 43448
All begin HVW20_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21085 | DUF262 domain-containing protein | |||
| 21090 | R | Ecos3057ORF9770P (100% identity) | Eco08C16ORF21095P | |
| 21095 | M | M.SspS13ORF3945P (100% identity) | M.Eco08C16ORF21095P | |
| 21100 | S | S.Eco42405ORF21135P (100% identity) | S.Eco08C16ORF21095P | |
| 21105 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 500 | IS3 family transposase | |||
| 505 | R | EcoTL14DptFP (100% identity) | Eco08C16DptFP | |
| 510 | DNA phosphorothioation-dependent restriction | |||
| 500 | IS3 family transposase | |||
| 505 | R | EcoTL14DptFP (100% identity) | Eco08C16DptF2P | |
| 510 | DNA phosphorothioation-dependent restriction | |||
| 505 | DNA phosphorothioation-dependent restriction | |||
| 510 | R | EcoTL14DptGP (100% identity) | Eco08C16DptGP | |
| 515 | DNA phosphorothioation-dependent restriction | |||
| 510 | DNA phosphorothioation-dependent restriction | |||
| 515 | R | Eco08C20DptHP (100% identity) | Eco08C16DptHP | |
| 520 | DUF262 domain-containing protein | |||
| 525 | AAA family ATPase | |||
| 530 | M | M.SenS530DndEP (100% identity) | M.Eco08C16DndEP | |
| 535 | DNA sulfur modification protein DndD | |||
| 530 | DNA sulfur modification protein DndE | |||
| 535 | M | M.EcoTL14DndDP (100% identity) | M.Eco08C16DndDP | |
| 540 | DNA phosphorothioation system sulfurtransferase | |||
| 535 | DNA sulfur modification protein DndD | |||
| 540 | M | M.EcoTL14DndCP (100% identity) | M.Eco08C16DndCP | |
| 545 | DNA sulfur modification protein DndB | |||
| 540 | DNA phosphorothioation system sulfurtransferase | |||
| 545 | M | M.EcoTL14DndBP (100% identity) | M.Eco08C16DndBP | |
| 550 | porin family protein | |||
| 2135 | cell division protein DamX | |||
| 2140 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco08C16DamP |
| 2145 | ribulose-phosphate 3-epimerase | |||
| 2665 | DUF2556 family protein | |||
| 2670 | M | M.Eco42405ORF2830P (100% identity) | ATGCAT | M.Eco08C16ORF2670P |
| 2675 | DNA-binding transcriptional regulator Fis | |||
| 9860 | phosphohydrolase | |||
| 9865 | M | M.EcosEC71DcmP (100% identity) | CCWGG | M.Eco08C16DcmP |
| 9870 | V | V.EcosEC71DcmP (100% identity) | V.Eco08C16DcmP | |
| 9875 | drug/metabolite exporter YedA | |||
| 14985 | holin | |||
| 14995 | M | M.Eco1B2ORF10215P (100% identity) | M.Eco08C16ORF14995P | |
| 15000 | TrmB family transcriptional regulator | |||
| 21320 | RM | Eco42405ORF21370P (100% identity) | Eco08C16ORF21320P | |
| 21325 | DEAD/DEAH box helicase | |||
| 21365 | HNH endonuclease | |||
| 21370 | R | Eco42405ORF21420P (100% identity) | Eco08C16ORF21370P | |
| 21375 | 59 aa hypothetical protein | |||
| 22700 | 63 aa hypothetical protein | |||
| 22705 | M | M.Eco9078ORF5116P (100% identity) | M.Eco08C16ORF22705P | |
| 22710 | TrmB family transcriptional regulator | |||
| 22740 | LexA family transcriptional regulator | |||
| 22745 | M | M.EcosA33ORF3820P (100% identity) | GATC | M.Eco08C16ORF22745P |
| 22750 | PerC family transcriptional regulator | |||
| plasmid pRHB08-C16_2 | ||||
| 25320 | 73 aa hypothetical protein | |||
| 25325 | M | M.EcoC9121ORF217P (100% identity) | M.Eco08C16ORF25325P | |
| 25330 | 103 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16020 | 66 aa hypothetical protein | |||
| 16025 | M | M.EcoFec101ORF21155P (100% identity) | M.Eco08C16ORF16025P | |
| 16030 | DUF2732 family protein | |||