Escherichia coli RHB34-C05 |
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Putative Escherichia coli RHB34-C05 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 5,064,807 bp | CP057176 |
| plasmid pRHB34-C05_2: | 65,344 bp | CP057177 |
REBASE acronym: Eco34C05
Org_num: 43136
All begin HVZ21_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9765 | IS3 family transposase | |||
| 9770 | M | M.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | M.Eco34C05ORF9770P |
| 9775 | S | S.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | S.Eco34C05ORF9770P |
| 9780 | YecA family protein | |||
| 9785 | cold shock domain-containing protein | |||
| 9790 | R | Ecoppa2ORF22455P (100% identity) | GATGNNNNNNTAC | Eco34C05ORF9770P |
| 9795 | M48 family metallopeptidase | |||
| 14390 | transcription factor | |||
| 14395 | M | M.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | M.Eco34C05ORF14395P |
| 14400 | S | S.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | S.Eco34C05ORF14395P |
| 14405 | DUF4433 domain-containing protein | |||
| 14410 | macro domain-containing protein | |||
| 14415 | R | Sbo49812IP (100% identity) | YTCANNNNNNGTTY | Eco34C05ORF14395P |
| 14420 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2010 | cell division protein DamX | |||
| 2015 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco34C05DamP |
| 2020 | ribulose-phosphate 3-epimerase | |||
| 2540 | DUF2556 family protein | |||
| 2545 | M | M.Ecoppa2ORF6235P (100% identity) | ATGCAT | M.Eco34C05ORF2545P |
| 2550 | DNA-binding transcriptional regulator Fis | |||
| 4315 | osmoprotectant transport activator ProQ | |||
| 4320 | M | M.SflFF24DndBP (100% identity) | M.Eco34C05DndBP | |
| 4325 | DNA phosphorothioation system sulfurtransferase | |||
| 4320 | DNA sulfur modification protein DndB | |||
| 4325 | M | M.SflFF24DndCP (100% identity) | M.Eco34C05DndCP | |
| 4330 | DNA sulfur modification protein DndD | |||
| 4325 | DNA phosphorothioation system sulfurtransferase | |||
| 4330 | M | M.SflFF24DndDP (100% identity) | M.Eco34C05DndDP | |
| 4335 | DNA sulfur modification protein DndE | |||
| 4330 | DNA sulfur modification protein DndD | |||
| 4335 | M | M.SflFF24DndEP (100% identity) | M.Eco34C05DndEP | |
| 4340 | DGQHR domain-containing protein | |||
| 4350 | accessory gene regulator B family protein | |||
| 4355 | R | EcosEC5DptHP (100% identity) | Eco34C05DptHP | |
| 4360 | DNA phosphorothioation-dependent restriction | |||
| 4355 | DNA phosphorothioation-dependent restriction | |||
| 4360 | R | SflFF24DptGP (100% identity) | Eco34C05DptGP | |
| 4365 | DNA phosphorothioation-dependent restriction | |||
| 4360 | DNA phosphorothioation-dependent restriction | |||
| 4365 | R | SflFF24DptFP (100% identity) | Eco34C05DptFP | |
| 4370 | porin family protein | |||
| 9510 | phosphohydrolase | |||
| 9515 | M | M.Ecoppa2DcmP (100% identity) | CCWGG | M.Eco34C05DcmP |
| 9520 | V | V.Ecoppa2DcmP (100% identity) | V.Eco34C05DcmP | |
| 9525 | drug/metabolite exporter YedA | |||
| plasmid pRHB34-C05_2 | ||||
| 23910 | 103 aa hypothetical protein | |||
| 23915 | M | M.Sso8ORF23800P (100% identity) | SAY | M.Eco34C05ORF23915P |
| 23920 | 73 aa hypothetical protein | |||