Escherichia coli RHB39-C17 |
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Putative Escherichia coli RHB39-C17 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,973,716 bp | CP057057 |
| plasmid pRHB39-C17_2: | 129,449 bp | CP057058 |
| plasmid pRHB39-C17_3: | 93,415 bp | CP057059 |
REBASE acronym: Eco39C17
Org_num: 43165
All begin HVZ84_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9990 | tyrosine-type recombinase/integrase | |||
| 9995 | R | EcoXJ63ORF9345P (100% identity) | Eco39C17ORF9995P | |
| 10000 | M48 family metallopeptidase | |||
| 20345 | adenine/cytosine-specific restriction | |||
| 20350 | R | EcoXJ63ORF19820P (100% identity) | AACNNNNNNGTGC | Eco39C17ORF20355P |
| 20355 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco39C17ORF20355P |
| 20360 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.Eco39C17ORF20355P |
| 20365 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1815 | cell division protein DamX | |||
| 1820 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco39C17DamP |
| 1825 | ribulose-phosphate 3-epimerase | |||
| 2345 | DUF2556 family protein | |||
| 2350 | M | M.EcoXJ63ORF2395P (100% identity) | ATGCAT | M.Eco39C17ORF2350P |
| 2355 | DNA-binding transcriptional regulator Fis | |||
| 9670 | phosphohydrolase | |||
| 9675 | M | M.EcoXJ63DcmP (100% identity) | CCWGG | M.Eco39C17DcmP |
| 9680 | V | V.SsoSE61DcmP (100% identity) | V.Eco39C17DcmP | |
| 9685 | drug/metabolite exporter YedA | |||
| 15540 | replication endonuclease | |||
| 15545 | M | M.Eco39C21ORF15550P (100% identity) | GATC | M.Eco39C17ORF15545P |
| 15550 | TraR/DksA family transcriptional regulator | |||
| 22675 | phage portal protein | |||
| 22680 | R | Eho218ORF15P (100% identity) | Eco39C17ORF22685P | |
| 22685 | M | M.SflFF22ORF10P (100% identity) | M.Eco39C17ORF22685P | |
| 22690 | replication endonuclease | |||
| plasmid pRHB39-C17_2 | ||||
| 24295 | 73 aa hypothetical protein | |||
| 24300 | M | M.Eco39C21ORF24305P (100% identity) | M.Eco39C17ORF24300P | |
| 24305 | 101 aa hypothetical protein | |||
| plasmid pRHB39-C17_3 | ||||
| 24510 | glutamine--tRNA ligase | |||
| 24515 | M | M.EcoE2863ORF5533P (100% identity) | M.Eco39C17ORF24515P | |
| 24520 | recombination-associated protein RdgC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20340 | GTPase | |||
| 20345 | R | SenHNK130MrrP (100% identity) | Eco39C17Mrr2P | |
| 20350 | type I restriction-modification system | |||
| 20365 | endoribonuclease SymE | |||
| 20370 | R | SenHNK130McrBP (100% identity) | Eco39C17McrBP | |
| 20375 | R | SenHNK130McrCP (100% identity) | Eco39C17McrCP | |
| 20380 | DEAD/DEAH box helicase | |||