Escherichia coli RHB40-C07 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli RHB40-C07 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,877,229 bp | CP057022 |
| plasmid pRHB40-C07_2: | 89,908 bp | CP057023 |
REBASE acronym: Eco40C07
Org_num: 43175
All begin HVZ95_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20110 | adenine/cytosine-specific restriction | |||
| 20115 | R | Eco42C22ORF11485P (100% identity) | Eco40C07ORF20120P | |
| 20120 | M | M.Eco40C21ORF20130P (100% identity) | M.Eco40C07ORF20120P | |
| 20125 | S | S.Eco40C21ORF20130P (100% identity) | S.Eco40C07ORF20120P | |
| 20130 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1715 | cell division protein DamX | |||
| 1720 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco40C07DamP |
| 1725 | ribulose-phosphate 3-epimerase | |||
| 2270 | DUF2556 family protein | |||
| 2275 | M | M.Eco40C21ORF2275P (100% identity) | ATGCAT | M.Eco40C07ORF2275P |
| 2280 | DNA-binding transcriptional regulator Fis | |||
| 6195 | Com family DNA-binding transcriptional | |||
| 6200 | M | M.EcoH22ORF6530P (100% identity) | M.Eco40C07ORF6200P | |
| 6205 | ribosome-associated translation inhibitor RaiA | |||
| 9560 | phosphohydrolase | |||
| 9565 | M | M.Eco40C21DcmP (100% identity) | CCWGG | M.Eco40C07DcmP |
| 9570 | V | V.Ecostr9DcmP (74% identity) | V.Eco40C07DcmP | |
| 9575 | drug/metabolite exporter YedA | |||
| 11405 | TrmB family transcriptional regulator | |||
| 11410 | M | M.EcoV04ORF12550P (100% identity) | M.Eco40C07ORF11410P | |
| 11415 | 92 aa hypothetical protein | |||
| 20345 | HNH endonuclease | |||
| 20350 | R | Ecoi362ORF3874P (100% identity) | Eco40C07ORF20350P | |
| 20355 | 59 aa hypothetical protein | |||
| plasmid pRHB40-C07_2 | ||||
| 23660 | 73 aa hypothetical protein | |||
| 23665 | M | M.EcoWY5172ORF23370P (100% identity) | M.Eco40C07ORF23665P | |
| 23670 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20105 | GTPase | |||
| 20110 | R | Ssp28760MrrP (100% identity) | Eco40C07MrrP | |
| 20115 | type I restriction-modification system | |||
| 20130 | endoribonuclease SymE | |||
| 20135 | R | Eco40C21McrBP (100% identity) | Eco40C07McrBP | |
| 20140 | R | Eco40C21McrCP (100% identity) | Eco40C07McrCP | |