Escherichia coli RHB40-C11 |
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Putative Escherichia coli RHB40-C11 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,877,231 bp | CP057016 |
| plasmid pRHB40-C11_2: | 89,908 bp | CP057017 |
REBASE acronym: Eco40C11
Org_num: 43178
All begin HVZ98_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20130 | adenine/cytosine-specific restriction | |||
| 20135 | R | Eco42C22ORF11485P (100% identity) | Eco40C11ORF20140P | |
| 20140 | M | M.Eco40C21ORF20130P (100% identity) | M.Eco40C11ORF20140P | |
| 20145 | S | S.Eco40C21ORF20130P (100% identity) | S.Eco40C11ORF20140P | |
| 20150 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1715 | cell division protein DamX | |||
| 1720 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco40C11DamP |
| 1725 | ribulose-phosphate 3-epimerase | |||
| 2270 | DUF2556 family protein | |||
| 2275 | M | M.Eco40C21ORF2275P (100% identity) | ATGCAT | M.Eco40C11ORF2275P |
| 2280 | DNA-binding transcriptional regulator Fis | |||
| 6195 | Com family DNA-binding transcriptional | |||
| 6200 | M | M.EcoH22ORF6530P (100% identity) | M.Eco40C11ORF6200P | |
| 6205 | ribosome-associated translation inhibitor RaiA | |||
| 9570 | phosphohydrolase | |||
| 9575 | M | M.Eco40C21DcmP (100% identity) | CCWGG | M.Eco40C11DcmP |
| 9580 | V | V.Ecostr9DcmP (74% identity) | V.Eco40C11DcmP | |
| 9585 | drug/metabolite exporter YedA | |||
| 11415 | TrmB family transcriptional regulator | |||
| 11420 | M | M.EcoV04ORF12550P (100% identity) | M.Eco40C11ORF11420P | |
| 11425 | 92 aa hypothetical protein | |||
| 20365 | HNH endonuclease | |||
| 20370 | R | Ecoi362ORF3874P (100% identity) | Eco40C11ORF20370P | |
| 20375 | 59 aa hypothetical protein | |||
| plasmid pRHB40-C11_2 | ||||
| 23680 | 73 aa hypothetical protein | |||
| 23685 | M | M.EcoWY5172ORF23370P (100% identity) | M.Eco40C11ORF23685P | |
| 23690 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20125 | GTPase | |||
| 20130 | R | Ssp28760MrrP (100% identity) | Eco40C11MrrP | |
| 20135 | type I restriction-modification system | |||
| 20150 | endoribonuclease SymE | |||
| 20155 | R | Eco40C21McrBP (100% identity) | Eco40C11McrBP | |
| 20160 | R | Eco40C21McrCP (100% identity) | Eco40C11McrCP | |