Nitrosococcus oceani ATCC 19707 |
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Putative Nitrosococcus oceani ATCC 19707 RM systems
Ref: Klotz,M.G. et al. Appl. Environ. Microbiol. 72 (9), 6299-6315 (2006)
REBASE ref # 9645
| Sequence length: | GenBank #: | |
| Chromosome: | 3,481,691 bp | CP000127 (NC_007484) |
| plasmid A: | 40,420 bp | CP000126 (NC_007483) |
REBASE acronym: NocA
Org_num: 4178
All begin Noc_, Noc_A
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 159 | sodium/proton antiporter, CPA1 family | |||
| 160 | R | type I site-specific restriction-modification | NocAORF160P | |
| 161 | Succinylglutamate desuccinylase/aspartoacylase | |||
| 438 | Plasmid maintenance system killer | |||
| 439 | M | M.HspDN3ORF15120P (83% identity) | M.NocAORF439BP | |
| 440 | PilT protein-like protein | |||
| 441 | plasmid protein | |||
| 442 | Transposase | |||
| 443 | M | 46 aa hypothetical protein | M.NocAORF439AP | |
| 444 | Plasmid stabilization system | |||
| 445 | Helix-turn-helix protein, CopG | |||
| 446 | S | S.Cbe229ORF1730P (44% identity) | S.NocAORF439P | |
| ??? | R | HspDN3ORF15120P (77% identity) | NocAORF439P | |
| 449 | 98 aa conserved hypothetical protein | |||
| 1157 | 132 aa conserved hypothetical protein | |||
| ??? | M | type I restriction-modification system, M subunit | M.NocAORF1158P | |
| 1160 | S | S.Sal18064ORF6435P (38% identity) | S.NocAORF1158P | |
| 1161 | 235 aa conserved hypothetical protein | |||
| 1162 | 156 aa conserved hypothetical protein | |||
| 1163 | R | MprAceLIIIP (70% identity) | NocAORF1158P | |
| 1164 | 141 aa conserved hypothetical protein | |||
| 1200 | pseudogene | |||
| 1201 | M | M.NwaCORF1822P (96% identity) | M.NocAORF1201P | |
| 1202 | Protein of unknown function DUF86 | |||
| 1203 | DNA polymerase, beta-like region | |||
| 1204 | S | S.NwaCORF1822P (60% identity) | S.NocAORF1201P | |
| 1205 | R | NwaCORF1822P (94% identity) | NocAORF1201P | |
| 1206 | methionine synthase (B12-dependent) | |||
| 1803 | transposase | |||
| 1804 | R | AspDG881ORFBP (82% identity) | NocAORF1809P | |
| 1805 | Death-on-curing protein | |||
| 1806 | Abortive infection bacteriophage resistance | |||
| 1807 | protein containing HTH-type DNA-binding domain | |||
| 1808 | S | S.MspP4B1ORF1545P (50% identity) | S.NocAORF1809P | |
| 1809 | M | M.MspP4B1ORF1545P (60% identity) | M.NocAORF1809P | |
| 1810 | 5-nucleotidase | |||
| 2686 | Transposase | |||
| 2687 | M | M.NwaCORF430P (97% identity) | M.NocAORF2687P | |
| 2688 | S | S.Sku7850SII (49% identity) | S.NocAORF2687P | |
| 2689 | R | NwaCORF430P (97% identity) | NocAORF2687P | |
| 2690 | Short-chain dehydrogenase/reductase SDR | |||
| 2902 | Transposase | |||
| 2903 | M | M.MspC1S70ORF13435P (89% identity) | M.NocAORF2903P | |
| 2904 | S | S.AspP2S70ORF16320P (50% identity) | S.NocAORF2903P | |
| 2905 | Nucleotidyltransferase substrate binding | |||
| 2906 | 116 aa hypothetical protein | |||
| 2907 | 231 aa conserved hypothetical protein | |||
| 2908 | 129 aa conserved hypothetical protein | |||
| 2909 | R | NwaCORF2990P (96% identity) | NocAORF2903P | |
| 2910 | Protein of unknown function DUF45 | |||
| 2923 | FxsA cytoplasmic membrane protein | |||
| ??? | M | type I restriction-modification system, M subunit | M.NocAORF2924P | |
| 2925 | 130 aa conserved hypothetical protein | |||
| 3027 | 79 aa conserved hypothetical protein | |||
| 3028 | R | KspM2ORF9490P (83% identity) | NocAORF3029P | |
| 3029 | M | M.DmuORFBP (90% identity) | M.NocAORF3029P | |
| 3030 | S | S2.DhyAcRS1ORF6185P (63% identity) | S.NocAORF3029P | |
| 3031 | 70 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 58 | 119 aa hypothetical protein | |||
| 59 | M | M.DnoVCSORF180P (70% identity) | M.NocAORF59P | |
| 60 | ATP-binding region, ATPase-like protein | |||
| 343 | 392 aa hypothetical protein | |||
| 344 | M | M.NwaCORF2759P (93% identity) | GATC | M.NocADamP |
| 345 | Thioredoxin reductase | |||
| 418 | pseudogene | |||
| ??? | R | Che9613ORF2190P (26% identity) | GANTC | NocAORF419P |
| 419 | M | M.NwaCORF2682P (96% identity) | GANTC | M.NocAORF419P |
| 420 | Amidohydrolase-like protein | |||
| 545 | Helicase-like protein | |||
| 546 | M | M.Pae23197ORF8265P (57% identity) | M.NocAORF546P | |
| 547 | 204 aa hypothetical protein | |||
| 654 | 949 aa conserved hypothetical protein | |||
| 655 | M | M.MfiC10ORFUP (69% identity) | M.NocAORF655P | |
| 656 | helicase, DEAD/DEAH box family | |||
| 1366 | Transposase | |||
| 1367 | M | M.Gsp652769ORF23295P (67% identity) | AGGCCT | M.NocAORF1367P |
| ??? | R | Gsp652769ORF23295P (77% identity) | AGGCCT | NocAORF1367P |
| 1370 | LmbE-like protein | |||
| 1464 | Micrococcal nuclease (SNase-like) | |||
| 1465 | RM | Mrh1211ORF11560P (69% identity) | NocAORF1465P | |
| 1466 | 683 aa conserved hypothetical protein | |||
| 1899 | 87 aa conserved hypothetical membrane protein | |||
| ??? | RM | helicase A859L | NocAORF1900P | |
| 1901 | Inorganic diphosphatase | |||
| 2195 | 296 aa hypothetical protein | |||
| 2196 | M | M.Nwa347ORF1233P (72% identity) | AGGCCT | M.NocAORF2196P |
| 2197 | R | Tfr970ORF2124P (25% identity) | NocAORF2196P | |
| 2198 | Transposase, IS605 OrfB | |||
| plasmid A | ||||
| 27 | WGR | |||
| 28 | RM | NocNS58ORF310P (100% identity) | NocAORF28P | |
| 29 | Helicase-like | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1459 | Peptidase M28 | |||
| 1460 | M | possible DNA methylase | M.NocAORF1460P | |
| 1461 | PilT-like protein | |||
| 2926 | UbiE/COQ5 methyltransferase | |||
| 2927 | R | HspA332ORF31535P (88% identity) | NocAORF2928P | |
| 2928 | M | M.Lsp19329ORF15700AP (40% identity) | M.NocAORF2928P | |
| 2929 | 127 aa conserved hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid A | ||||
| 9 | 135 aa hypothetical protein | |||
| 10 | R | NwaCMrrP (100% identity) | NocAMrrP | |
| 11 | 244 aa hypothetical protein | |||