Escherichia coli RHBSTW-00562 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli RHBSTW-00562 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,649,154 bp | CP056404 |
| plasmid pRHBSTW-00562_2: | 68,855 bp | CP056405 |
REBASE acronym: Eco0562
Org_num: 42821
All begin HV235_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8950 | IS1 family transposase | |||
| 8955 | R | EcosNDM5ORF9185P (100% identity) | Eco0562ORF8955P | |
| 8960 | M48 family metallopeptidase | |||
| 20150 | IS3-like element ISSen4 family transposase | |||
| 20155 | R | EcotcmA3ORF16550P (100% identity) | Eco0562ORF20175P | |
| 20160 | DNA-processing protein DprA | |||
| 20165 | RecQ family ATP-dependent DNA helicase | |||
| 20170 | S | S.EcotcmA3ORF16550P (100% identity) | S.Eco0562ORF20175P | |
| 20175 | M | M.Pre393ORF2750P (100% identity) | M.Eco0562ORF20175P | |
| 20180 | helix-turn-helix domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1620 | cell division protein DamX | |||
| 1625 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco0562DamP |
| 1630 | ribulose-phosphate 3-epimerase | |||
| 2250 | DUF2556 family protein | |||
| 2255 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco0562ORF2255P |
| 2260 | DNA-binding transcriptional regulator Fis | |||
| 8635 | phosphohydrolase | |||
| 8640 | M | M.SflC32DcmP (100% identity) | CCWGG | M.Eco0562DcmP |
| 8645 | V | V.SflC32DcmP (74% identity) | V.Eco0562DcmP | |
| 8650 | drug/metabolite exporter YedA | |||
| 18895 | IS21-like element IS100 family transposase | |||
| 18900 | R | SflFF87ORF20150P (100% identity) | Eco0562ORF18900P | |
| 18905 | sigma 54-interacting transcriptional regulator | |||
| plasmid pRHBSTW-00562_2 | ||||
| 22090 | 103 aa hypothetical protein | |||
| 22095 | M | M.Sfl0030ORFCP (100% identity) | SAY | M.Eco0562ORF22095P |
| 22100 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18640 | 100 aa hypothetical protein | |||
| 18645 | R | SflN116ORF19490P (100% identity) | GAACC | Eco0562ORF18650P |
| 18650 | M | M.SflN116ORF19490P (100% identity) | GAACC | M.Eco0562ORF18650P |
| 18655 | DEAD/DEAH box helicase family protein | |||