Citrobacter freundii RHBSTW-00942 |
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Putative Citrobacter freundii RHBSTW-00942 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 5,297,052 bp | CP056235 |
| plasmid pRHBSTW-00942_2: | 312,668 bp | CP056236 |
REBASE acronym: Cfr942
Org_num: 42567
All begin HV333_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 395 | 191 aa hypothetical protein | |||
| 400 | R | KpnS1651ORFBP (100% identity) | Cfr942ORF405P | |
| 405 | M | M.KpnS1651ORFBP (100% identity) | M.Cfr942ORF405P | |
| 410 | S | S.EcoS43ORF9365P (99% identity) | S.Cfr942ORF405P | |
| 415 | 117 aa hypothetical protein | |||
| 5650 | 291 aa hypothetical protein | |||
| 5655 | M | M.SenS12VPHORF19925P (100% identity) | M.Cfr942ORF5655P | |
| 5660 | S | S.SenS12VPHORF19925P (59% identity) | S1.Cfr942ORF5655P | |
| 5665 | IS5-like element IS903B family transposase | |||
| 5670 | S | S.SenS12VPHORF19925P (40% identity) | S2.Cfr942ORF5655P | |
| 5675 | DUF91 domain-containing protein | |||
| 5680 | R | SenS12VPHORF19925P (100% identity) | Cfr942ORF5655P | |
| 5685 | 56 aa hypothetical protein | |||
| 23840 | M48 family metallopeptidase | |||
| 23845 | R | CfrNIH4ORF24355P (100% identity) | CRAAYNNNNNNTCNNC | Cfr942ORF23875P |
| 23850 | transcriptional regulator | |||
| 23855 | IS3 family transposase | |||
| 23860 | DNA binding domain-containing protein | |||
| 23865 | AAA family ATPase | |||
| 23870 | S | S.Sxi6416ORF5545P (100% identity) | CRAAYNNNNNNTCNNC | S.Cfr942ORF23875P |
| 23875 | M | M.CfrNIH4ORF24355P (99% identity) | CRAAYNNNNNNTCNNC | M.Cfr942ORF23875P |
| 23880 | transcription factor | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1700 | cell division protein DamX | |||
| 1705 | M | M.Eco5172DamP (100% identity) | GATC | M.Cfr942DamP |
| 1710 | ribulose-phosphate 3-epimerase | |||
| 2245 | DUF2556 family protein | |||
| 2250 | M | M.CspLUTT5ORF2195P (100% identity) | ATGCAT | M.Cfr942ORF2250P |
| 2255 | tyrosine-type recombinase/integrase | |||
| 8565 | conserved phage C-terminal domain-containing | |||
| 8570 | M | M.CfrNIH4ORF13780P (100% identity) | M.Cfr942ORF8570P | |
| 8575 | RusA family crossover junction | |||
| 8620 | TrmB family transcriptional regulator | |||
| 8625 | M | M.CfrNIH4ORF13725P (100% identity) | M.Cfr942ORF8625P | |
| 8630 | phage holin family protein | |||
| 10420 | phosphohydrolase | |||
| 10425 | M | M.CspSL156ORF9755P (100% identity) | CCWGG | M.Cfr942ORF10425P |
| 10430 | V | V.Eco5172ORF1715P (100% identity) | V.Cfr942ORF10425P | |
| 10435 | drug/metabolite exporter YedA | |||
| 11345 | 54 aa hypothetical protein | |||
| 11350 | M | M.CbrOC08ORF11010P (99% identity) | M.Cfr942ORF11350P | |
| 11355 | DUF551 domain-containing protein | |||
| 11360 | 85 aa hypothetical protein | |||
| 11365 | M | M.Cfr26019ORF11730P (99% identity) | M.Cfr942ORF11365P | |
| 11370 | DUF1643 domain-containing protein | |||
| 20150 | DUF1317 family protein | |||
| ??? | M | M.Sma10508ORF22415P (95% identity) | M.Cfr942ORF20155P | |
| 20160 | DUF4060 family protein | |||
| 21880 | HNH endonuclease | |||
| 21885 | R | Cfr935ORF21080P (100% identity) | Cfr942ORF21885P | |
| 21890 | toxin CbtA | |||
| 22025 | protein kinase | |||
| 22030 | S | S.MspYPW1ORF7840P (80% identity) | S.Cfr942ORF22040P | |
| 22035 | 104 aa hypothetical protein | |||
| 22040 | M | M2.Kpn80121ORFCP (96% identity) | M.Cfr942ORF22040P | |
| 22045 | helix-turn-helix domain-containing protein | |||
| plasmid pRHBSTW-00942_2 | ||||
| 26055 | 76 aa hypothetical protein | |||
| 26060 | M | M.Sen3039ORF24445P (100% identity) | M.Cfr942ORF26060P | |
| 26065 | DNA polymerase III subunit beta | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10225 | prepilin cleavage protein | |||
| 10230 | R | Cfr658ORF9535P (99% identity) | CCGAG | Cfr942ORF10235P |
| 10235 | M | M.KquC3001ORF9710P (99% identity) | CCGAG | M.Cfr942ORF10235P |
| 10240 | SpnT protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22000 | 100 aa hypothetical protein | |||
| 22005 | R | EspWA005McrCP (95% identity) | Cfr942McrCP | |
| 22010 | R | EspWA005McrBP (96% identity) | Cfr942McrBP | |