Citrobacter freundii RHBSTW-00398 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Citrobacter freundii RHBSTW-00398 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 5,067,906 bp | CP055538 |
| plasmid pRHBSTW-00398_2: | 299,953 bp | CP055539 |
| plasmid unnamed: | 124,541 bp | CP055540 |
REBASE acronym: Cfr398
Org_num: 42116
All begin HV183_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2770 | AAA family ATPase | |||
| 2775 | R | Kpa2ORF26750P (100% identity) | Cfr398ORF2785P | |
| 2780 | S | S.Kpa2ORF26750P (100% identity) | S.Cfr398ORF2785P | |
| 2785 | M | M.Kpa2ORF26750P (100% identity) | M.Cfr398ORF2785P | |
| 2790 | 70 aa hypothetical protein | |||
| 9320 | 391 aa hypothetical protein | |||
| 9325 | M | M.EcoMB10ORF9000P (99% identity) | M.Cfr398ORF9325P | |
| 9330 | S | S.EcoPO3ORF10055P (98% identity) | S.Cfr398ORF9325P | |
| 9335 | YecA family protein | |||
| 9340 | R | CfrF3221ORF11240P (99% identity) | Cfr398ORF9325P | |
| 9345 | M48 family metallopeptidase | |||
| 17815 | tyrosine-type recombinase/integrase | |||
| 17820 | M | M.SenS688ORF13495P (12% identity) | GGANNNNNCTC | M.Cfr398ORF17820AP |
| 17825 | IS1 family transposase | |||
| 17830 | M | M.KpnS1313ORF16435P (86% identity) | GGANNNNNCTC | M.Cfr398ORF17820BP |
| 17835 | S | S.Ror24150ORF17255P (100% identity) | GGANNNNNCTC | S.Cfr398ORF17820P |
| 17840 | R | Kpn1331ORFCP (100% identity) | GGANNNNNCTC | Cfr398ORF17820P |
| 17845 | IS1 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1105 | 28 aa hypothetical protein | |||
| 1110 | M | M.Cfr355ORF1450P (99% identity) | M.Cfr398ORF1110P | |
| 1115 | R | Cfr355ORF1450P (99% identity) | Cfr398ORF1110P | |
| 1120 | NAAT family transporter YhgN | |||
| 1330 | cell division protein DamX | |||
| 1335 | M | M.Eco9094DamP (100% identity) | GATC | M.Cfr398DamP |
| 1340 | ribulose-phosphate 3-epimerase | |||
| 2905 | BREX-1 system phosphatase PglZ type A | |||
| 2910 | RM | Kpn4542ORF22725P (97% identity) | GCGAACB | Cfr398ORF2910P |
| 2915 | BREX system P-loop protein BrxC | |||
| 9025 | phosphohydrolase | |||
| 9030 | M | M.Cfr714ORF14660P (100% identity) | M.Cfr398ORF9030P | |
| 9035 | V | V.Cfr714ORF14660P (100% identity) | V.Cfr398ORF9030P | |
| 9040 | drug/metabolite exporter YedA | |||
| 9740 | conserved phage C-terminal domain-containing | |||
| 9745 | M | M1.CspC21ORF10975P (96% identity) | M1.Cfr398ORF9745P | |
| 9750 | M | M2.Cbr9ORF26660P (98% identity) | M2.Cfr398ORF9745P | |
| 9755 | RusA family crossover junction | |||
| 14505 | 255 aa hypothetical protein | |||
| 14510 | M | M.CfrNIH4ORF11235P (100% identity) | M.Cfr398ORF14510P | |
| 14515 | ATP-binding protein | |||
| 21855 | DNA-binding transcriptional regulator Fis | |||
| 21860 | M | M.CfrU1ORF2155P (100% identity) | M.Cfr398ORF21860P | |
| 21865 | DUF2556 family protein | |||
| plasmid pRHBSTW-00398_2 | ||||
| 24600 | recombinase family protein | |||
| 24605 | R | Sen23701ORF24490P (100% identity) | CCWGG | Cfr398ORF24610P |
| 24610 | M | M.SflLIN11ORF24665P (100% identity) | CCWGG | M.Cfr398ORF24610P |
| 24615 | IS1 family transposase | |||
| 24840 | DNA polymerase III subunit beta | |||
| 24845 | M | M.Sen3039ORF24445P (100% identity) | M.Cfr398ORF24845P | |
| 24850 | 76 aa hypothetical protein | |||
| plasmid unnamed | ||||
| 26165 | 115 aa hypothetical protein | |||
| 26170 | M | M.EhoEhh24ORF24435P (100% identity) | M.Cfr398ORF26170P | |
| 26175 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2760 | 207 aa hypothetical protein | |||
| 2765 | R | Kpa2McrCP (99% identity) | Cfr398McrCP | |
| 2770 | R | Kpa2McrBP (100% identity) | Cfr398McrBP | |
| 2775 | type I restriction endonuclease subunit R | |||