Escherichia coli RHB04-C10 |
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Putative Escherichia coli RHB04-C10 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,777,222 bp | CP055796 |
| plasmid pRHB04-C10_2: | 102,502 bp | CP055797 |
REBASE acronym: Eco04C10
Org_num: 42130
All begin HVV71_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5575 | IS1 family transposase | |||
| 5580 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | Eco04C10ORF5590P |
| 5585 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.Eco04C10ORF5590P |
| 5590 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.Eco04C10ORF5590P |
| 5595 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1665 | cell division protein DamX | |||
| 1670 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco04C10DamP |
| 1675 | ribulose-phosphate 3-epimerase | |||
| 2290 | DUF2556 family protein | |||
| 2295 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco04C10ORF2295P |
| 2300 | DNA-binding transcriptional regulator Fis | |||
| 9375 | TrmB family transcriptional regulator | |||
| 9380 | M | M.Eco04C20ORF9380P (100% identity) | M.Eco04C10ORF9380P | |
| 9390 | holin | |||
| 9500 | phosphohydrolase | |||
| 9505 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Eco04C10DcmP |
| 9510 | V | V.SsoSE61DcmP (100% identity) | V.Eco04C10DcmP | |
| 9515 | drug/metabolite exporter YedA | |||
| 16595 | NinE family protein | |||
| 16600 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco04C10ORF16600P |
| 16605 | recombination protein NinB | |||
| 19235 | PerC family transcriptional regulator | |||
| 19240 | M | M.Eco04C20ORF19230P (100% identity) | GATC | M.Eco04C10ORF19240P |
| 19245 | LexA family transcriptional regulator | |||
| 19280 | TrmB family transcriptional regulator | |||
| 19285 | M | M.EcoY18JORF19500P (100% identity) | M.Eco04C10ORF19285P | |
| 19290 | phage lysis protein EssD | |||
| plasmid pRHB04-C10_2 | ||||
| 23625 | 74 aa hypothetical protein | |||
| 23630 | M | M.Eco04C20ORF23615P (100% identity) | M.Eco04C10ORF23630P | |
| 23635 | 101 aa hypothetical protein | |||