Escherichia coli 005008 |
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Putative Escherichia coli 005008 RM systems
Ref: Yang,P. et al. unpublished
REBASE ref # 30924
| Sequence length: | GenBank #: | |
| Chromosome: | 4,848,135 bp | CP058661 |
| plasmid pCMY42_005008: | 68,106 bp | CP058662 |
| plasmid pCTXM15_005008: | 149,236 bp | CP058663 |
REBASE acronym: Eco5008
Org_num: 41973
All begin HZR83_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 325 | IS5-like element ISKpn26 family transposase | |||
| 330 | R | Eco324ORF3610P (100% identity) | GAANNNNNNTAYG | Eco5008ORF340P |
| 335 | S | S.Ecoi162ORF4671P (100% identity) | GAANNNNNNTAYG | S.Eco5008ORF340P |
| 340 | M | M.Eco324ORF3610P (100% identity) | GAANNNNNNTAYG | M.Eco5008ORF340P |
| 345 | GTPase family protein | |||
| 2325 | 400 aa hypothetical protein | |||
| 2330 | M | M.Sma1978ORFBP (100% identity) | ACGNNNNNGTTG | M.Eco5008ORF2330P |
| 2335 | AAA family ATPase | |||
| 2340 | S | S.Sma1978ORFBP (100% identity) | ACGNNNNNGTTG | S.Eco5008ORF2330P |
| 2345 | DNA binding domain-containing protein | |||
| 2350 | histidinol-phosphatase | |||
| 2355 | R | Sma1978ORFBP (100% identity) | ACGNNNNNGTTG | Eco5008ORF2330P |
| 2360 | helix-turn-helix domain-containing protein | |||
| 16830 | M48 family metallopeptidase | |||
| 16835 | R | EcoSB43ORF10515P (100% identity) | Eco5008ORF16855P | |
| 16840 | cold shock domain-containing protein | |||
| 16845 | YecA family protein | |||
| 16850 | S | S1.EcoSB43ORF10515P (100% identity) | S.Eco5008ORF16855P | |
| 16855 | M | M.EcoSB43ORF10515P (100% identity) | M.Eco5008ORF16855P | |
| 16860 | IS1 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1155 | DNA-binding transcriptional regulator Fis | |||
| 1160 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.Eco5008ORF1160P |
| 1165 | DUF2556 family protein | |||
| 1800 | ribulose-phosphate 3-epimerase | |||
| 1805 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco5008DamP |
| 1810 | cell division protein DamX | |||
| 4605 | replication endonuclease | |||
| 4610 | M | M.SflFF38ORF15P (100% identity) | M.Eco5008ORF4610P | |
| 4615 | 329 aa hypothetical protein | |||
| 17100 | drug/metabolite exporter YedA | |||
| 17105 | V | V.EcosEC7DcmP (100% identity) | V.Eco5008DcmP | |
| 17110 | M | M.EcosEC5DcmP (100% identity) | CCWGG | M.Eco5008DcmP |
| 17115 | phosphohydrolase | |||
| plasmid pCMY42_005008 | ||||
| 23290 | 103 aa hypothetical protein | |||
| 23295 | M | M.Ssp14523ORF22990P (100% identity) | M.Eco5008ORF23295P | |
| 23300 | 73 aa hypothetical protein | |||
| plasmid pCTXM15_005008 | ||||
| 24365 | 73 aa hypothetical protein | |||
| 24370 | M | M.KpnVA569ORF28145P (100% identity) | M.Eco5008ORF24355P | |
| 24375 | 102 aa hypothetical protein | |||