Escherichia coli AMSCJX04 |
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Putative Escherichia coli AMSCJX04 RM systems
Ref: Ji,X. unpublished
REBASE ref # 26874
| Sequence length: | GenBank #: | |
| Chromosome: | 4,854,921 bp | CP058308 |
| plasmid pAMPD01: | 109,907 bp | CP058309 |
| plasmid pAMPD02: | 129,018 bp | CP058310 |
| plasmid pAMPD03: | 217,263 bp | CP058311 |
REBASE acronym: EcoJX04
Org_num: 41689
All begin HXS78_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4040 | transposase | |||
| 4045 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | EcoJX04ORF4050P |
| 4050 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoJX04ORF4050P |
| 4055 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoJX04ORF4050P |
| 4060 | AAA family ATPase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1685 | cell division protein DamX | |||
| 1690 | M | M.EcosEC71DamP (100% identity) | GATC | M.EcoJX04DamP |
| 1695 | ribulose-phosphate 3-epimerase | |||
| 2240 | DUF2556 family protein | |||
| 2245 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoJX04ORF2245P |
| 2250 | DNA-binding transcriptional regulator Fis | |||
| 8595 | 55 aa hypothetical protein | |||
| 8600 | M | M.Cfr714ORF22570P (87% identity) | M.EcoJX04ORF8600P | |
| 8605 | 57 aa hypothetical protein | |||
| 9445 | phosphohydrolase | |||
| 9450 | M | M.SsoSE61DcmP (100% identity) | CCWGG | M.EcoJX04DcmP |
| 9455 | V | V.SsoSE61DcmP (100% identity) | V.EcoJX04DcmP | |
| 9460 | drug/metabolite exporter YedA | |||
| 17875 | phage holin, lambda family | |||
| 17880 | M | M.SflFF3ORF20115P (98% identity) | M.EcoJX04ORF17880P | |
| 17885 | 67 aa hypothetical protein | |||
| 17920 | LexA family transcriptional regulator | |||
| 17925 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoJX04ORF17925P |
| 17930 | PerC family transcriptional regulator | |||
| 19830 | HNH endonuclease | |||
| 19835 | R | EcoPK8566ORF2340P (100% identity) | EcoJX04ORF19835P | |
| 19840 | 332 aa hypothetical protein | |||
| 19855 | BREX system P-loop protein BrxC | |||
| 19860 | RM | EcosEC71ORF19770P (97% identity) | EcoJX04ORF19860P | |
| 19865 | acetolactate synthase small subunit | |||
| 22050 | 329 aa hypothetical protein | |||
| 22055 | M | M.SflFF38ORF15P (100% identity) | M.EcoJX04ORF22055P | |
| 22060 | replication endonuclease | |||
| plasmid pAMPD02 | ||||
| 24465 | IS6-like element IS26 family transposase | |||
| 24470 | R | Ssp3CORF24390P (100% identity) | CCWGG | EcoJX04ORF24475P |
| 24475 | M | M.SflSTLE4ORF22820P (100% identity) | CCWGG | M.EcoJX04ORF24475P |
| 24480 | IS1 family transposase | |||
| plasmid pAMPD03 | ||||
| 24950 | thermonuclease family protein | |||
| 24955 | M | M.YpsF1ORFCP (100% identity) | M.EcoJX04ORF24955P | |
| 24960 | 55 aa hypothetical protein | |||
| 25430 | 284 aa hypothetical protein | |||
| 25435 | M | M.YpsF1ORFDP (100% identity) | M.EcoJX04ORF25435P | |
| 25440 | DNA-binding protein | |||
| 25545 | 202 aa hypothetical protein | |||
| 25550 | M | M.YpsF1ORFBP (100% identity) | M.EcoJX04ORF25550P | |
| 25555 | 48 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pAMPD01 | ||||
| 23765 | 269 aa hypothetical protein | |||
| 23770 | M | M.Sso524ORF460P (100% identity) | M.EcoJX04ORF23770P | |
| 23775 | 76 aa hypothetical protein | |||