Treponema phagedenis KS-1 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Treponema phagedenis KS-1 RM systems
Ref: Espiritu,H.M. unpublished
REBASE ref # 30869
Complete sequence: 3,769,422 bp
GenBank #: CP058241
REBASE acronym: TphKS1A
Org_num: 41789
All begin HW453_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3870 | uracil permease | |||
| 3875 | M | M.TphV1ORF40163P (100% identity) | M.TphKS1AORF3875P | |
| 3880 | 142 aa hypothetical protein | |||
| 13645 | leucine-rich repeat domain-containing protein | |||
| 13650 | M | M.TphKS1ORF2355P (100% identity) | M.TphKS1AORF13650P | |
| 13655 | 109 aa hypothetical protein | |||
| 13660 | S | S1.TphKS1ORF2355P (99% identity) | S1.TphKS1AORF13650P | |
| 13665 | S | S2.TphS23ORF13960P (99% identity) | S2.TphKS1AORF13650P | |
| 13670 | R | TphKS1ORF2355P (100% identity) | TphKS1AORF13650P | |
| 13675 | MFS transporter | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 90 | phage head morphogenesis protein | |||
| 95 | M | M.TphS23ORF13395P (99% identity) | M.TphKS1AORF95P | |
| 100 | 94 aa hypothetical protein | |||
| 780 | TdeIII family type II restriction endonuclease | |||
| 785 | M | M.TphV1ORF40108P (100% identity) | M.TphKS1AORF785P | |
| 790 | ABC transporter ATP-binding protein | |||
| 900 | cache domain-containing protein | |||
| 905 | M | M.TphS23ORF9240P (100% identity) | M.TphKS1AORF11465P | |
| 910 | 184 aa hypothetical protein | |||
| 1145 | 121 aa hypothetical protein | |||
| 1150 | S | S2.TphKS1ORF5050P (100% identity) | S2.TphKS1AORF1160P | |
| 1155 | S | S1.TphKS1ORF5050P (100% identity) | S1.TphKS1AORF1160P | |
| 1160 | RM | TphS23ORF7595P (99% identity) | TphKS1AORF1160P | |
| 1165 | ImmA/IrrE family metallo-endopeptidase | |||
| 1320 | ATP-binding protein | |||
| 1325 | M | M.TphKS1AORF4335P (100% identity) | M.TphKS1AORF1325P | |
| 1330 | 167 aa hypothetical protein | |||
| 2080 | 178 aa hypothetical protein | |||
| 2085 | M | M.TphKS1AORF16595P (98% identity) | M.TphKS1AORF2085P | |
| 2090 | EAL domain-containing protein | |||
| 2455 | 329 aa hypothetical protein | |||
| 2460 | M | M.TphT320AORF14130P (100% identity) | M.TphKS1AORF2460P | |
| 2465 | sensor histidine kinase | |||
| 2470 | 421 aa hypothetical protein | |||
| 2475 | V | V.TphS85ORF3615P (51% identity) | V.TphKS1AORF2460P | |
| 2480 | ATP-binding cassette domain-containing protein | |||
| 2545 | N-6 DNA methylase | |||
| 2550 | C | C.TphB314ORF7050P (98% identity) | C.TphKS1AORF2575P | |
| 2555 | 52 aa hypothetical protein | |||
| 2560 | single-stranded DNA-binding protein | |||
| 2565 | DUF3847 domain-containing protein | |||
| 2570 | R | TphKS1ORF6735P (100% identity) | GATC | TphKS1AORF2575P |
| 2575 | M | M.TphV1ORF20037P (100% identity) | GATC | M.TphKS1AORF2575P |
| 2580 | VWA domain-containing protein | |||
| 3260 | DUF4406 domain-containing protein | |||
| 3265 | M | M.TphS23ORF2495P (96% identity) | M.TphKS1AORF3265P | |
| 3270 | antA/AntB antirepressor family protein | |||
| 4310 | DUF4406 domain-containing protein | |||
| 4315 | M | M.TphKS1ORF7605P (97% identity) | M.TphKS1AORF4315P | |
| 4320 | antA/AntB antirepressor family protein | |||
| 4330 | 167 aa hypothetical protein | |||
| 4335 | M | M.TphKS1AORF1325P (100% identity) | M.TphKS1AORF4335P | |
| 4340 | ATP-binding protein | |||
| 5470 | ImmA/IrrE family metallo-endopeptidase | |||
| 5475 | RM | TphB431ORF8445P (98% identity) | TphKS1AORF5475P | |
| 5480 | S | S1.TphB365ORF4670P (99% identity) | S1.TphKS1AORF5475P | |
| 5485 | S | S.TphS85ORF115P (32% identity) | S2.TphKS1AORF5475P | |
| 5490 | 61 aa hypothetical protein | |||
| 5680 | DUF4406 domain-containing protein | |||
| 5685 | M | M.TphB365ORF2480P (94% identity) | M.TphKS1AORF5685P | |
| 5690 | antA/AntB antirepressor family protein | |||
| 6830 | restriction endonuclease | |||
| 6835 | M | M.TphKS1ORF3720P (100% identity) | M.TphKS1AORF6835P | |
| 6840 | TrkH family potassium uptake protein | |||
| 6910 | MBL fold metallo-hydrolase | |||
| 6915 | M | M1.TphT320AORF8425P (100% identity) | M.TphKS1AORF6915P | |
| 6920 | IS256 family transposase | |||
| 8790 | 555 aa hypothetical protein | |||
| 8795 | M | M.TphV1ORF260015P (100% identity) | M.TphKS1AORF8795P | |
| 8800 | DUF308 domain-containing protein | |||
| 11220 | DUF436 family protein | |||
| 11225 | M | M.TphS23ORF2005P (100% identity) | M.TphKS1AORF11225P | |
| 11230 | IS256 family transposase | |||
| 11385 | 184 aa hypothetical protein | |||
| 11390 | M | M.TphKS1AORF2085P (95% identity) | M.TphKS1AORF11390P | |
| 11395 | ABC transporter ATP-binding protein | |||
| 12440 | 117 aa hypothetical protein | |||
| 12445 | M | M.TphS23ORF15225P (100% identity) | M.TphKS1AORF12445P | |
| 12450 | transposase | |||
| 12630 | 229 aa hypothetical protein | |||
| 12635 | M | M.TphKS1ORF725P (100% identity) | M.TphKS1AORF12635P | |
| 12640 | R | TphS23ORF15025P (100% identity) | TphKS1AORF12635P | |
| 12645 | GTP cyclohydrolase I FolE2 | |||
| 14075 | TIGR02678 family protein | |||
| 14080 | R | TphKS1ORF2805P (100% identity) | TphKS1AORF14085P | |
| 14085 | M | M1.TphS85ORF13995P (100% identity) | M1.TphKS1AORF14085P | |
| 14090 | M | M2.TphV1ORF510001P (100% identity) | M2.TphKS1AORF14085P | |
| 14095 | sucrose-6-phosphate hydrolase | |||
| 14235 | methyl-accepting chemotaxis protein | |||
| 14240 | M | M.TphS85ORF14070P (100% identity) | M.TphKS1AORF14240P | |
| 14245 | 288 aa hypothetical protein | |||
| 14880 | 184 aa hypothetical protein | |||
| 14885 | M | M.TphV1ORF30139P (100% identity) | M.TphKS1AORF14885P | |
| 14890 | A/G-specific adenine glycosylase | |||
| 15245 | STAS-like domain-containing protein | |||
| 15250 | M | M.TphKS1AORF16595P (100% identity) | M.TphKS1AORF15250P | |
| 15255 | 184 aa hypothetical protein | |||
| 15615 | phosphohydrolase | |||
| 15620 | M | M.TphB314ORF13570P (98% identity) | M.TphKS1AORF15620P | |
| 15625 | ISNCY family transposase | |||
| 15810 | 184 aa hypothetical protein | |||
| 15815 | M | M.TphKS1AORF16595P (100% identity) | M.TphKS1AORF15815P | |
| 15820 | 202 aa hypothetical protein | |||
| 16590 | 184 aa hypothetical protein | |||
| 16595 | M | M.TphKS1AORF15815P (100% identity) | M.TphKS1AORF16595P | |
| 16600 | YxeA family protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 160 | 155 aa hypothetical protein | |||
| 165 | M | M.TphKS1ORF1030P (100% identity) | M.TphKS1AORF165P | |
| 170 | R | TphKS1ORF1030P (100% identity) | TphKS1AORF165P | |
| 175 | IclR family transcriptional regulator | |||
| 2295 | alpha/beta fold hydrolase | |||
| 2300 | R | TphKS1ORF6470P (100% identity) | TphKS1AORF2305P | |
| 2305 | M | M.TphS85ORF3440P (100% identity) | M.TphKS1AORF2305P | |
| 2310 | DUF4868 domain-containing protein | |||
| 2430 | helix-turn-helix transcriptional regulator | |||
| 2435 | M | M.TphV1ORF90053P (97% identity) | M.TphKS1AORF2435P | |
| 2440 | 93 aa hypothetical protein | |||
| 6100 | IS256 family transposase | |||
| 6105 | R | TphS23ORF10780P (100% identity) | TphKS1AORF6110P | |
| 6110 | M | M.TphS23ORF10780P (100% identity) | M.TphKS1AORF6110P | |
| 6115 | helix-turn-helix transcriptional regulator | |||