Escherichia coli 550 |
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Putative Escherichia coli 550 RM systems
Ref: Bitar,i. unpublished
REBASE ref # 28497
| Sequence length: | GenBank #: | |
| Chromosome: | 4,962,702 bp | CP058223 |
| plasmid p550_IncA_VIM_1: | 162,608 bp | CP058224 |
| plasmid p550_IncB_O_K_Z: | 100,306 bp | CP058225 |
REBASE acronym: Eco550
Org_num: 41684
All begin HWQ66_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1995 | adenine/cytosine-specific restriction | |||
| 2000 | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | Eco550ORF2005P |
| 2005 | M | M.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | M.Eco550ORF2005P |
| 2010 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.Eco550ORF2005P |
| 2015 | endoribonuclease SymE | |||
| 20130 | GTPase family protein | |||
| 20135 | M | M.Eco03AORF14655P (100% identity) | M.Eco550ORF20135P | |
| 20140 | S | S.Eco03AORF14655P (100% identity) | S.Eco550ORF20135P | |
| 20145 | R | Eco03AORF14655P (100% identity) | Eco550ORF20135P | |
| 20150 | transposase domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7345 | cell division protein DamX | |||
| 7350 | M | M.Ecos69DamP (100% identity) | GATC | M.Eco550DamP |
| 7355 | ribulose-phosphate 3-epimerase | |||
| 7875 | DUF2556 family protein | |||
| 7880 | M | M.Sdy12039ORFBP (25% identity) | M.Eco550ORF7880BP | |
| 7885 | tyrosine-type recombinase/integrase | |||
| 7890 | tyrosine-type recombinase/integrase | |||
| 7895 | tyrosine-type recombinase/integrase | |||
| 7900 | 191 aa hypothetical protein | |||
| 7905 | M | M.Ecos69ORF20890P (74% identity) | M.Eco550ORF7880AP | |
| 7910 | DNA-binding transcriptional regulator Fis | |||
| 14495 | phosphohydrolase | |||
| 14500 | M | M.Fnu048DcmP (100% identity) | CCWGG | M.Eco550DcmP |
| 14505 | V | V.Ecostr9DcmP (74% identity) | V.Eco550DcmP | |
| 14510 | drug/metabolite exporter YedA | |||
| 18770 | NinE family protein | |||
| 18775 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco550ORF18775P |
| 18780 | recombination protein NinB | |||
| plasmid p550_IncA_VIM_1 | ||||
| 24370 | 143 aa hypothetical protein | |||
| 24375 | M | M.Sma0cORF5065P (100% identity) | M.Eco550ORF24375P | |
| 24380 | 100 aa hypothetical protein | |||
| plasmid p550_IncB_O_K_Z | ||||
| 24865 | 103 aa hypothetical protein | |||
| 24870 | M | M.EcoO6877ORFAP (74% identity) | M.Eco550ORF24870AP | |
| 24875 | tyrosine-type recombinase/integrase | |||
| 24880 | tyrosine-type recombinase/integrase | |||
| 24885 | tyrosine-type recombinase/integrase | |||
| 24890 | 191 aa hypothetical protein | |||
| 24895 | M | M.Xca80ORFEP (25% identity) | M.Eco550ORF24870BP | |
| 24900 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1990 | GTPase | |||
| 1995 | R | EcosS1MrrP (100% identity) | Eco550MrrP | |
| 2000 | type I restriction-modification system | |||