Escherichia coli EcPF5 |
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Putative Escherichia coli EcPF5 RM systems
Ref: Sharon,B.M. et al. unpublished
REBASE ref # 30788
| Sequence length: | GenBank #: | |
| Chromosome: | 5,147,412 bp | CP054236 |
| plasmid p1: | 131,660 bp | CP054237 |
REBASE acronym: EcoPF5
Org_num: 41488
All begin HR070_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5410 | endoribonuclease SymE | |||
| 5415 | S | S.EcoUTI89II (100% identity) | GAGNNNNNNNGTCA | S.EcoPF5ORF5420P |
| 5420 | M | M.EcoUTI89II (97% identity) | GAGNNNNNNNGTCA | M.EcoPF5ORF5420P |
| 5425 | R | EcoUTI89IIP (100% identity) | GAGNNNNNNNGTCA | EcoPF5ORF5420P |
| 5430 | DUF262 domain-containing protein | |||
| plasmid p1 | ||||
| 25220 | IS1 family transposase | |||
| 25225 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNNCTGG | EcoPF5ORF25235P |
| 25230 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.EcoPF5ORF25235P |
| 25235 | M | M.KpnKPA1ORF26345P (100% identity) | CAAYNNNNNNCTGG | M.EcoPF5ORF25235P |
| 25240 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1780 | cell division protein DamX | |||
| 1785 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoPF5DamP |
| 1790 | ribulose-phosphate 3-epimerase | |||
| 2380 | DUF2556 family protein | |||
| 2385 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoPF5ORF2385P |
| 2390 | DNA-binding transcriptional regulator Fis | |||
| 5165 | AAA family ATPase | |||
| 5170 | M | M.EcoUS29ORF21080P (100% identity) | M.EcoPF5ORF5170P | |
| 5175 | HigA family addiction module antidote protein | |||
| 11040 | phosphohydrolase | |||
| 11045 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoPF5DcmP |
| 11050 | V | V.EcosC25DcmP (100% identity) | V.EcoPF5DcmP | |
| 11055 | drug/metabolite exporter YedA | |||
| 15035 | NinE family protein | |||
| 15040 | M | M.EcoUS29ORF13960P (100% identity) | GATC | M.EcoPF5ORF15040P |
| 15045 | recombination protein NinB | |||
| 20500 | tyrosine-type recombinase/integrase | |||
| 20505 | M | M.EcosEC31ORF18555P (100% identity) | GGTACC | M.EcoPF5ORF20505P |
| 20510 | zinc ribbon domain-containing protein | |||
| plasmid p1 | ||||
| 25125 | 73 aa hypothetical protein | |||
| 25130 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoPF5ORF25130P |
| 25135 | 102 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5185 | integrase arm-type DNA-binding domain-containing | |||
| 5190 | R | EcoUTI89IP (100% identity) | CACAG | EcoPF5ORF5195P |
| 5195 | M | M.EcoUTI89I (100% identity) | CACAG | M.EcoPF5ORF5195P |
| 5200 | ATP-binding domain-containing protein | |||