Campylobacter upsaliensis RM3940 |
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Putative Campylobacter upsaliensis RM3940 RM systems
Ref: Miller,W.G. and Yee,E. unpublished
REBASE ref # 27294
Complete sequence: 1,628,950 bp
GenBank #: CP053849
REBASE acronym: Cup3940
Org_num: 41476
All begin CUP3940_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 295 | 16S rRNA m7G527 methyltransferase | |||
| 296 | R | Hca12410ORF950P (97% identity) | Cup3940ORF297P | |
| 297 | M | M.Hca12410ORF950P (97% identity) | M.Cup3940ORF297P | |
| 298 | 74 aa hypothetical protein | |||
| 299 | toxin-antitoxin system, toxin component, | |||
| 300 | S | S.Cup11840ORF327P (72% identity) | S.Cup3940ORF297P | |
| 301 | tRNA U34 2-thiouridine synthase, MnmA family | |||
| 1050 | UDP-N-acetylmuramate-alanine ligase | |||
| 1051 | R | Cup11840IP (97% identity) | Cup3940ORF1056P | |
| 1052 | 322 aa hypothetical protein | |||
| 1053 | S | S.Cup11840I (84% identity) | S.Cup3940ORF1056P | |
| 1054 | Fic domain-containing protein | |||
| 1055 | 63 aa hypothetical protein | |||
| 1056 | M | M.Cup11840I (98% identity) | M.Cup3940ORF1056P | |
| 1058 | membrane protein | |||
| 1338 | 235 aa hypothetical protein | |||
| 1339 | M | M.Cup197059ORF1382P (98% identity) | M.Cup3940ORF1339P | |
| ??? | S | S.Hwi435ORF2180P (67% identity) | S.Cup3940ORF1339P | |
| 1341 | polysaccharide deacetylase family protein | |||
| 1573 | Tol-Pal system translocation protein TolB | |||
| 1574 | M | M.Cup14913ORF1616P (98% identity) | M.Cup3940ORF1574P | |
| 1575 | R | Hca12410ORF239P (91% identity) | Cup3940ORF1574P | |
| 1576 | S | S.Cup736ORF1225P (99% identity) | S.Cup3940ORF1574P | |
| 1577 | Tol-Pal system subunit TolA | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 550 | 378 aa conserved hypothetical protein | |||
| 551 | M | M.Cup736ORF4220P (100% identity) | M.Cup3940ORF551P | |
| 552 | lipoprotein releasing system, transmembrane | |||
| 609 | N-succinyl-diaminopimelate deacylase | |||
| 610 | RM | Cup11541ORF638P (99% identity) | Cup3940ORF610P | |
| 611 | 284 aa hypothetical protein | |||
| 714 | 172 aa hypothetical protein | |||
| 715 | R | Cup736ORF5055P (100% identity) | Cup3940ORF716P | |
| 716 | M | M.Cup736ORF5055P (98% identity) | M.Cup3940ORF716P | |
| 717 | phosphate ABC transporter, periplasmic | |||
| 766 | 204 aa hypothetical protein | |||
| 767 | RM | Cup6824ORF3545P (64% identity) | Cup3940ORF767P | |
| 768 | undecaprenyl diphosphate synthetase | |||
| 1015 | 471 aa hypothetical protein | |||
| ??? | M | M.Cup736ORF6595P (99% identity) | M.Cup3940ORF1016P | |
| 1017 | R | Cup736ORF6595P (100% identity) | Cup3940ORF1016P | |
| 1018 | chorismate mutase / prephenate dehydratase | |||
| 1227 | membrane protein | |||
| 1228 | R | Cup6824ORF5895P (97% identity) | Cup3940ORF1229P | |
| 1229 | M | M.Cup6824ORF5895P (100% identity) | M.Cup3940ORF1229P | |
| 1230 | DNA polymerase I, 5 -- 3 polymerase, 5 -- 3 | |||
| 1247 | N-methyltryptophan oxidase | |||
| ??? | M | M.Cup6824ORF5990P (98% identity) | M.Cup3940ORF1248P | |
| 1249 | R | Cup736ORF7770P (100% identity) | Cup3940ORF1248P | |
| 1250 | DUF262 domain-containing protein | |||
| 1268 | tungsten ABC transporter TupABC, ATP-binding | |||
| 1269 | M | M.Cup736ORF7870P (100% identity) | M.Cup3940ORF1269P | |
| 1270 | 676 aa hypothetical protein | |||
| 1270 | 676 aa hypothetical protein | |||
| 1271 | M | M.Cup6824ORF6100P (100% identity) | M.Cup3940ORF1271P | |
| 1272 | acetyl-CoA synthetase | |||
| 1362 | imidazole glycerol phosphate synthase HisFH, | |||
| 1363 | M | M.Cup12264ORF208P (97% identity) | M.Cup3940ORF1363P | |
| 1364 | R | Cup736ORF160P (100% identity) | Cup3940ORF1363P | |
| 1365 | imidazoleglycerol-phosphate dehydratase / | |||
| 1466 | ABC transporter, ATP-binding protein | |||
| ??? | M | M.CupORF1283P (89% identity) | M.Cup3940ORF1467P | |
| 1468 | R | Hci798ORFVP (89% identity) | Cup3940ORF1467P | |
| 1469 | [4Fe-4S] dicluster domain-containing protein | |||
| 1624 | N-acetyl-gamma-glutamylphosphate reductase, | |||
| 1625 | R | Cup736ORF1485P (100% identity) | Cup3940ORF1626P | |
| 1626 | M | M1.Cup736ORF1485P (100% identity) | M1.Cup3940ORF1626P | |
| 1627 | M | M2.Cup736ORF1485P (99% identity) | M2.Cup3940ORF1626P | |
| 1628 | type II adenine-specific DNA methyltransferase | |||
| 1627 | type IIS restriction/modification system, DNA | |||
| 1628 | M | M.Cup6824ORF7900P (100% identity) | M.Cup3940ORF1628P | |
| 1629 | 271 aa hypothetical protein | |||
| 1636 | DNA topoisomerase I | |||
| 1637 | M | M.Cup6824ORF7945P (99% identity) | M.Cup3940ORF1637P | |
| 1638 | 150 aa hypothetical protein | |||
| 1639 | glutamate synthase, large subunit | |||
| 1640 | M | M.Cup21ORF1546P (99% identity) | M.Cup3940ORF1640P | |
| 1641 | R | Cup11541ORF1720P (98% identity) | Cup3940ORF1640P | |
| 1642 | glutamate synthase, small subunit | |||
| 1644 | 23S rRNA pseudouridine 2605 synthase | |||
| ??? | M | M1.Cup736ORF1585P (100% identity) | M1.Cup3940ORF1645P | |
| 1646 | M | M2.Cup21ORF1551P (100% identity) | M2.Cup3940ORF1645P | |
| 1647 | R | Cup736ORF1585P (100% identity) | Cup3940ORF1645P | |
| 1648 | RuvABC resolvasome, subunit RuvC | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 70 | YuiF family protein, putative amino acid | |||
| 71 | R | Cup11540ORF78P (95% identity) | Cup3940ORF72P | |
| 72 | M | M.Cup736ORF1980P (100% identity) | M.Cup3940ORF72P | |
| 73 | radical SAM superfamily protein (SPASM domain) | |||
| 524 | membrane protein | |||
| ??? | R | Cup736ORF4090P (99% identity) | Cup3940ORF526P | |
| ??? | M | M.Cup4ORFAP (92% identity) | M.Cup3940ORF526P | |
| 527 | lipid A disaccharide synthase | |||