Treponema phagedenis KS1 |
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Putative Treponema phagedenis KS1 RM systems
Ref: Espiritu,H.M. et al. unpublished
REBASE ref # 30761
Complete sequence: 3,188,924 bp
GenBank #: CP054692
REBASE acronym: TphKS1
Org_num: 41369
All begin HPJ96_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2350 | leucine-rich repeat domain-containing protein | |||
| 2355 | M | M.TphKS1AORF13650P (100% identity) | M.TphKS1ORF2355P | |
| 2360 | virulence RhuM family protein | |||
| 2365 | cell filamentation protein Fic | |||
| 2370 | S | S1.TphB431ORF2455P (100% identity) | S1.TphKS1ORF2355P | |
| 2375 | S | S2.TphB431ORF2455P (100% identity) | S2.TphKS1ORF2355P | |
| 2380 | IS5 family transposase | |||
| 2385 | R | TphKS1AORF13650P (100% identity) | TphKS1ORF2355P | |
| 2390 | MFS transporter | |||
| 5785 | 153 aa hypothetical protein | |||
| 5790 | M | M.TphV1ORF40163P (100% identity) | M.TphKS1ORF5790P | |
| 5795 | 103 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 65 | M3 family oligoendopeptidase | |||
| 70 | M | M.TphS23ORF13395P (100% identity) | M.TphKS1ORF70P | |
| 75 | 61 aa hypothetical protein | |||
| 280 | 184 aa hypothetical protein | |||
| 285 | M | M.TphB431ORF275P (99% identity) | M.TphKS1ORF285P | |
| 290 | 243 aa hypothetical protein | |||
| 715 | GTP cyclohydrolase I FolE2 | |||
| 720 | R | TphV1ORF290010P (98% identity) | TphKS1ORF725P | |
| 725 | M | M.TphKS1AORF12635P (100% identity) | M.TphKS1ORF725P | |
| 730 | 229 aa hypothetical protein | |||
| 1975 | Cache 3/Cache 2 fusion domain-containing | |||
| 1980 | M | M.TphKS1ORF3335P (100% identity) | M.TphKS1ORF1980P | |
| 1985 | 184 aa hypothetical protein | |||
| 2190 | phage head morphogenesis protein | |||
| 2195 | M | M.TphKS1ORF3540P (100% identity) | M.TphKS1ORF2195P | |
| 2200 | alpha/beta hydrolase | |||
| 2795 | TIGR02678 family protein | |||
| 2800 | R | TphKS1AORF14085P (100% identity) | TphKS1ORF2805P | |
| 2805 | M | M1.TphS85ORF13995P (100% identity) | M1.TphKS1ORF2805P | |
| 2810 | M | M2.TphV1ORF510001P (100% identity) | M2.TphKS1ORF2805P | |
| 2815 | sucrose-6-phosphate hydrolase | |||
| 2875 | leucine-rich repeat domain-containing protein | |||
| 2880 | M | M.TphS85ORF14070P (100% identity) | M.TphKS1ORF2880P | |
| 2885 | 288 aa hypothetical protein | |||
| 3330 | endonuclease/exonuclease/phosphatase family | |||
| 3335 | M | M.TphKS1ORF1980P (100% identity) | M.TphKS1ORF3335P | |
| 3340 | 184 aa hypothetical protein | |||
| 3535 | 61 aa hypothetical protein | |||
| 3540 | M | M.TphKS1ORF2195P (100% identity) | M.TphKS1ORF3540P | |
| 3545 | 494 aa hypothetical protein | |||
| 3715 | IS5 family transposase | |||
| 3720 | M | M.TphKS1AORF6835P (100% identity) | M.TphKS1ORF3720P | |
| 3725 | restriction endonuclease | |||
| 4785 | phage antirepressor KilAC domain-containing | |||
| 4790 | M | M.TphKS1ORF7605P (100% identity) | M.TphKS1ORF4790P | |
| 4795 | DUF4406 domain-containing protein | |||
| 5035 | 121 aa hypothetical protein | |||
| 5040 | S | S2.TphKS1AORF1160P (100% identity) | S2.TphKS1ORF5050P | |
| 5045 | S | S1.TphKS1AORF1160P (100% identity) | S1.TphKS1ORF5050P | |
| 5050 | RM | TphB431ORF5370P (98% identity) | TphKS1ORF5050P | |
| 5055 | ImmA/IrrE family metallo-endopeptidase | |||
| 6045 | TdeIII family type II restriction endonuclease | |||
| 6050 | M | M.TphV1ORF40108P (100% identity) | M.TphKS1ORF6050P | |
| 6055 | ABC transporter ATP-binding protein | |||
| 6630 | 329 aa hypothetical protein | |||
| 6635 | M | M.TphT320AORF14130P (100% identity) | M.TphKS1ORF6635P | |
| 6640 | sensor histidine kinase | |||
| 6725 | DUF3847 domain-containing protein | |||
| 6730 | R | TphKS1AORF2575P (100% identity) | GATC | TphKS1ORF6735P |
| 6735 | M | M.TphV1ORF20037P (100% identity) | GATC | M.TphKS1ORF6735P |
| 6740 | replication initiator protein A | |||
| 7600 | phage antirepressor KilAC domain-containing | |||
| 7605 | M | M.TphKS1ORF4790P (100% identity) | M.TphKS1ORF7605P | |
| 7610 | DUF4406 domain-containing protein | |||
| 7840 | restriction endonuclease subunit S | |||
| 7845 | S | S1.TphS23ORF7595P (49% identity) | S1.TphKS1ORF7850P | |
| 7850 | RM | TphS23ORF7595P (97% identity) | TphKS1ORF7850P | |
| 7855 | ImmA/IrrE family metallo-endopeptidase | |||
| 8510 | 167 aa hypothetical protein | |||
| 8515 | M | M.TphS23ORF10380P (96% identity) | M.TphKS1ORF8515P | |
| 8520 | ATP-binding protein | |||
| 10470 | 555 aa hypothetical protein | |||
| 10475 | M | M.TphV1ORF260015P (100% identity) | M.TphKS1ORF10475P | |
| 10480 | DUF308 domain-containing protein | |||
| 10870 | antA/AntB antirepressor family protein | |||
| 10875 | M | M.TphB431ORF11700P (94% identity) | M.TphKS1ORF10875P | |
| 10880 | DUF4406 domain-containing protein | |||
| 12515 | methyl-accepting chemotaxis protein | |||
| 12520 | M | M.TphKS1ORF3540P (99% identity) | M.TphKS1ORF12520P | |
| 12525 | 61 aa hypothetical protein | |||
| 12730 | 184 aa hypothetical protein | |||
| 12735 | M | M.TphV1ORF30139P (100% identity) | M.TphKS1ORF12735P | |
| 12740 | glutamine-hydrolyzing GMP synthase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1025 | 131 aa hypothetical protein | |||
| 1030 | M | M.TphKS1AORF165P (100% identity) | M.TphKS1ORF1030P | |
| 1035 | R | TphKS1AORF165P (100% identity) | TphKS1ORF1030P | |
| 1040 | IclR family transcriptional regulator | |||
| 6460 | alpha/beta fold hydrolase | |||
| 6465 | R | TphKS1AORF2305P (100% identity) | TphKS1ORF6470P | |
| 6470 | M | M.TphS85ORF3440P (100% identity) | M.TphKS1ORF6470P | |
| 6475 | DUF4868 domain-containing protein | |||
| 6605 | helix-turn-helix transcriptional regulator | |||
| 6610 | M | M.TphV1ORF90053P (97% identity) | M.TphKS1ORF6610P | |
| 6615 | 93 aa hypothetical protein | |||