Helicobacter suis NHP19-0020 |
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Putative Helicobacter suis NHP19-0020 RM systems
Ref: Suzuki,M. and Rimbara,E. unpublished
REBASE ref # 30607
| Sequence length: | GenBank #: | |
| Chromosome: | 1,726,209 bp | AP023036 |
| plasmid pNHP190020_1: | 45,075 bp | AP023037 |
REBASE acronym: Hsu0020
Org_num: 40846
All begin NHP190020_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6290 | 3-deoxy-D-manno-octulosonate 8-phosphate | |||
| 6300 | R | Hpy4004ORF4930P (100% identity) | Hsu0020ORF6320P | |
| 6310 | S | S.Hsu4022ORF4640P (100% identity) | S.Hsu0020ORF6320P | |
| 6320 | M | M.Hsu101cORF7690P (100% identity) | M.Hsu0020ORF6320P | |
| 6330 | Outer membrane protein | |||
| 11850 | 82 aa hypothetical protein | |||
| 11860 | S | S.Hsu101ORFDP (100% identity) | S.Hsu0020ORF11870P | |
| ??? | M | M.Hsu101cORF9840P (100% identity) | M.Hsu0020ORF11870P | |
| 11890 | S-ribosylhomocysteine lyase LuxS | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1180 | 85 aa hypothetical protein | |||
| ??? | M | M.Hpy4004ORF1180P (100% identity) | M.Hsu0020ORF1190P | |
| 1210 | 287 aa hypothetical protein | |||
| 1350 | selenocysteine-specific translation elongation | |||
| 1360 | M | M.HsuHS1ORF1490P (99% identity) | M.Hsu0020ORF1360P | |
| 1370 | 299 aa hypothetical protein | |||
| 1560 | 766 aa hypothetical protein | |||
| ??? | M | M.Hsu4022ORF16450P (100% identity) | M.Hsu0020ORF1570P | |
| 1590 | 110 aa hypothetical protein | |||
| 1930 | Fumarate hydratase FumC | |||
| 1940 | M | M.HsuHS1ORF3730P (100% identity) | M.Hsu0020ORF1940P | |
| 1950 | 193 aa hypothetical protein | |||
| 2280 | 256 aa hypothetical protein | |||
| 2290 | R | Hsu101cORF2840P (100% identity) | Hsu0020ORF2300P | |
| 2300 | M | M.Hsu4022ORF2850P (100% identity) | M.Hsu0020ORF2300P | |
| 2310 | Bifunctional NAD(P)H-hydrate repair enzyme Nnr | |||
| 2890 | Phosphatidylglycerophosphatase A PgpA | |||
| ??? | M | M.Hsu4022ORF2260P (99% identity) | M.Hsu0020ORF2900P | |
| 2920 | R | Hsu4022ORF2260P (99% identity) | Hsu0020ORF2900P | |
| 2930 | ABC transporter ATP-binding protein YheS | |||
| 2970 | 640 aa hypothetical protein | |||
| ??? | M | M.Hsu4022ORF2180P (100% identity) | M.Hsu0020ORF2980P | |
| 3000 | 1-deoxy-D-xylulose-5-phosphate synthase Dxs | |||
| 3730 | 146 aa hypothetical protein | |||
| 3740 | RM | Hsu4022ORF1410P (97% identity) | Hsu0020ORF3740P | |
| 3750 | 486 aa hypothetical protein | |||
| 5780 | 39 aa hypothetical protein | |||
| 5790 | M | M.HsuHS1ORF4820P (100% identity) | M.Hsu0020ORF5790P | |
| 5800 | 467 aa hypothetical protein | |||
| 6060 | 239 aa hypothetical protein | |||
| 6070 | R | Hsu4022ORF4350P (100% identity) | Hsu0020ORF6080P | |
| ??? | M | M.Hsu4022ORF4350P (100% identity) | M.Hsu0020ORF6080P | |
| 6090 | 154 aa hypothetical protein | |||
| 6600 | Shikimate kinase AroK | |||
| 6620 | M | M1.Hsu101cORF11240P (100% identity) | M1.Hsu0020ORF6620P | |
| 6630 | M | M2.HsuHS1ORF9300P (100% identity) | M2.Hsu0020ORF6620P | |
| 6640 | R | HsuHS1ORF9300P (100% identity) | Hsu0020ORF6620P | |
| 6650 | Phosphotransacetylase | |||
| 10810 | 126 aa hypothetical protein | |||
| 10820 | M | M.Hsu101cORF3700P (100% identity) | M.Hsu0020ORF10820P | |
| 10830 | 53 aa hypothetical protein | |||
| 14570 | NADPH dehydrogenase | |||
| 14580 | M | M.Hsu4022ORF11330P (100% identity) | M.Hsu0020ORF14580P | |
| 14590 | 109 aa hypothetical protein | |||
| 16390 | DNA polymerase III subunit delta HolA | |||
| ??? | R | Hsu4022ORF9470P (100% identity) | Hsu0020ORF16410P | |
| 16410 | M | M.HsuHS1ORF7680P (100% identity) | M.Hsu0020ORF16410P | |
| 16420 | Shikimate 5-dehydrogenase | |||
| 17540 | 190 aa hypothetical protein | |||
| ??? | R | Hsu4022ORF16820P (100% identity) | Hsu0020ORF17560P | |
| 17560 | M | M.HsuHS1ORF18000P (100% identity) | M.Hsu0020ORF17560P | |
| 17570 | Molybdopterin-guanine dinucleotide biosynthesis | |||
| plasmid pNHP190020_1 | ||||
| 18220 | VirB2 type IV secretion protein | |||
| 18230 | M | M1.HsuHS1ORF19120P (100% identity) | M1.Hsu0020ORF18230P | |
| ??? | R | HsuHS1ORF19120P (81% identity) | Hsu0020ORF18230P | |
| 18260 | M | M.HsuHS1ORF18820P (93% identity) | M2.Hsu0020ORF18230P | |
| 18270 | IS605 transposase TnpB | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1060 | HIT family protein | |||
| 1070 | M | M.Hsu101cORF1070P (100% identity) | M.Hsu0020ORF1070P | |
| 1080 | 97 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17370 | 160 aa hypothetical protein | |||
| 17380 | R | Hpy4004McrCP (99% identity) | Hsu0020McrCP | |
| 17390 | R | Hsu4022McrBP (99% identity) | Hsu0020McrBP | |
| 17400 | 101 aa hypothetical protein | |||