Escherichia coli SCU-478 |
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Putative Escherichia coli SCU-478 RM systems
Ref: Stephens,C. et al. unpublished
REBASE ref # 30384
| Sequence length: | GenBank #: | |
| Chromosome: | 4,090,497 bp | CP054563 |
| Chromosome: | 1,073,687 bp | CP054564 |
| plasmid pSCU-478-1: | 116,613 bp | CP054565 |
REBASE acronym: EcoSCU478
Org_num: 40720
All begin HPE44_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3485 | GTPase family protein | |||
| 3490 | M | M.EcoPM7ORF22985P (98% identity) | M.EcoSCU478ORF3490P | |
| 3495 | S | S.EcoZ151ORF20915P (68% identity) | S.EcoSCU478ORF3490P | |
| 3500 | R | Eco0410ORF9850P (99% identity) | EcoSCU478ORF3490P | |
| 3505 | 122 aa hypothetical protein | |||
| 8905 | membrane domain protein | |||
| 8910 | R | SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | EcoSCU478ORF8915P |
| 8915 | M | M.SspS13ORF3945P (100% identity) | CCANNNNNNNNNTTGG | M.EcoSCU478ORF8915P |
| 8920 | S | S.SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | S.EcoSCU478ORF8915P |
| 8925 | endoribonuclease SymE | |||
| 9125 | 128 aa hypothetical protein | |||
| 9130 | M | M.EcoVCSW8ORF19350P (100% identity) | TGHAYNNNNCTNC | M.EcoSCU478ORF9130P |
| 9135 | S | S.SflFF71ORF17365P (100% identity) | TGHAYNNNNCTNC | S.EcoSCU478ORF9130P |
| 9140 | 428 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1925 | 114 aa hypothetical protein | |||
| 1935 | M | M.Eco8196ORF1822P (98% identity) | M.EcoSCU478ORF1935P | |
| 1940 | TrmB family transcriptional regulator | |||
| 14290 | cell division protein DamX | |||
| 14295 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoSCU478DamP |
| 14300 | ribulose-phosphate 3-epimerase | |||
| 14820 | DUF2556 family protein | |||
| 14825 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoSCU478ORF14825P |
| 14830 | DNA-binding transcriptional regulator Fis | |||
| 16705 | conjugal transfer protein TraG N-terminal | |||
| ??? | M | M2.EcoA41ORF21415P (77% identity) | M1.EcoSCU478ORF16710P | |
| ??? | M | M2.EcoSTEC648ORF4060P (91% identity) | M2.EcoSCU478ORF16710P | |
| ??? | R | EcoA41ORF21415P (86% identity) | EcoSCU478ORF16710P | |
| 16745 | IS66 family insertion sequence hypothetical | |||
| 18820 | Com family DNA-binding transcriptional | |||
| 18825 | M | M.SenYU39ORF1896P (100% identity) | M.EcoSCU478ORF18825P | |
| 18830 | ribosome-associated translation inhibitor RaiA | |||
| Chromosome | ||||
| 21850 | drug/metabolite exporter YedA | |||
| 21855 | V | V.SflFF64DcmP (100% identity) | V.EcoSCU478DcmP | |
| 21860 | M | M.EcoVCSW8DcmP (100% identity) | CCWGG | M.EcoSCU478DcmP |
| 21865 | phosphohydrolase | |||
| plasmid pSCU-478-1 | ||||
| 25235 | 101 aa hypothetical protein | |||
| 25240 | M | M.Eco746ORF25930P (99% identity) | M.EcoSCU478ORF25240P | |
| 25245 | 73 aa hypothetical protein | |||
| 25615 | 97 aa hypothetical protein | |||
| ??? | M | M.Eco746ORF25930P (96% identity) | M.EcoSCU478ORF25620P | |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9110 | HNH endonuclease | |||
| 9115 | R | SflN101McrBP (100% identity) | EcoSCU478McrBP | |
| 9120 | R | EcoVCSW8McrCP (100% identity) | EcoSCU478McrCP | |
| 9125 | 128 aa hypothetical protein | |||