Escherichia coli SCU-120 |
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Putative Escherichia coli SCU-120 RM systems
Ref: Stephens,C. et al. unpublished
REBASE ref # 30306
| Sequence length: | GenBank #: | |
| Chromosome: | 5,196,142 bp | CP054335 |
| plasmid pSCU-120-1: | 142,873 bp | CP054336 |
| plasmid pSCU-120-2: | 98,630 bp | CP054337 |
REBASE acronym: EcoSCU120
Org_num: 40276
All begin HHJ33_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14280 | endoribonuclease SymE | |||
| 14285 | R | Ecou021ORF19870P (99% identity) | RTACNNNNGTG | EcoSCU120ORF14295P |
| 14290 | S | S.Ecou021ORF19870P (99% identity) | RTACNNNNGTG | S.EcoSCU120ORF14295P |
| 14295 | M | M.Ecou021ORF19870P (99% identity) | RTACNNNNGTG | M.EcoSCU120ORF14295P |
| 14300 | restriction endonuclease | |||
| 25075 | M48 family metallopeptidase | |||
| 25080 | R | Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | EcoSCU120ORF25100P |
| 25085 | cold shock domain-containing protein | |||
| 25090 | YecA family protein | |||
| 25095 | S | S.Ecos142ORF9685P (95% identity) | GATGNNNNNNTAC | S.EcoSCU120ORF25100P |
| 25100 | M | M.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | M.EcoSCU120ORF25100P |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 260 | drug/metabolite exporter YedA | |||
| 265 | V | V.EcoSCU390DcmP (98% identity) | V.EcoSCU120DcmP | |
| 270 | M | M.Ecos142DcmP (100% identity) | CCWGG | M.EcoSCU120DcmP |
| 275 | phosphohydrolase | |||
| 3490 | PerC family transcriptional regulator | |||
| 3495 | M | M.SspPIBORF6330P (100% identity) | M.EcoSCU120ORF3495P | |
| 3500 | DUF1382 family protein | |||
| 7930 | DNA-binding transcriptional regulator Fis | |||
| 7935 | M | M.Ecos142ORF2405P (97% identity) | ATGCAT | M.EcoSCU120ORF7935P |
| 7940 | DUF2556 family protein | |||
| 8460 | ribulose-phosphate 3-epimerase | |||
| ??? | M | M.EcoSCU147DamP (99% identity) | GATC | M.EcoSCU120DamP |
| 8475 | cell division protein DamX | |||
| 12410 | 294 aa hypothetical protein | |||
| 12415 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoSCU120ORF12415P |
| 12420 | LexA family transcriptional regulator | |||
| 12450 | 67 aa hypothetical protein | |||
| 12455 | M | M.Sso63633ORF22290P (100% identity) | M.EcoSCU120ORF12455P | |
| 12460 | class II holin family protein | |||
| 13775 | 97 aa hypothetical protein | |||
| 13780 | R | EcosEC2ORF20400P (74% identity) | EcoSCU120ORF13780P | |
| 13785 | IS1-like element IS1A family transposase | |||
| 19200 | TraR/DksA family transcriptional regulator | |||
| 19205 | M | M.SspS13ORF8710P (100% identity) | GATC | M.EcoSCU120ORF19205P |
| 19210 | replication endonuclease | |||
| 21615 | TrmB family transcriptional regulator | |||
| 21620 | M | M.SsoL4094ORF17545P (100% identity) | A | M.EcoSCU120ORF21620P |
| 21635 | DUF3927 family protein | |||
| plasmid pSCU-120-1 | ||||
| 25820 | 73 aa hypothetical protein | |||
| 25825 | M | M.KpnVA569ORF28145P (100% identity) | M.EcoSCU120ORF25825P | |
| 25830 | 102 aa hypothetical protein | |||
| plasmid pSCU-120-2 | ||||
| 26115 | recombination-associated protein RdgC | |||
| 26120 | M | M.EcoEcC25ORFBP (97% identity) | M.EcoSCU120ORF26120P | |
| 26125 | 55 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pSCU-120-2 | ||||
| 26370 | maturation control protein | |||
| 26375 | R | SenSL0052ORF25975P (100% identity) | AGACC | EcoSCU120ORF26380P |
| 26380 | M | M.SenSL0052ORF25975P (100% identity) | AGACC | M.EcoSCU120ORF26380P |
| 26385 | modulator protein | |||