Helicobacter pylori HP1352 |
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Putative Helicobacter pylori HP1352 RM systems
Ref: Butenko,I. et al. unpublished
REBASE ref # 30452
Complete sequence: 1,663,714 bp
GenBank #: CP053394
REBASE acronym: Hpy1352
Org_num: 40403
All begin HK441_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 380 | LPP20 family lipoprotein | |||
| 385 | S | S.HpyHPYORF385P (100% identity) | S.Hpy1352ORF390P | |
| 390 | M | M.HpyHPYORF385P (100% identity) | M.Hpy1352ORF390P | |
| 395 | integrase | |||
| 565 | relaxase/mobilization nuclease domain-containing | |||
| 570 | M | M.HpyHPYORF570P (100% identity) | M.Hpy1352ORF570P | |
| 575 | R | HpyHPYORF570P (100% identity) | Hpy1352ORF570P | |
| 580 | M48 family metallopeptidase | |||
| 3065 | RNA degradosome polyphosphate kinase | |||
| 3075 | S | S.HpyHPYORF3080P (100% identity) | S.Hpy1352ORF3080P | |
| 3080 | M | M.HpyHPYORF3080P (100% identity) | M.Hpy1352ORF3080P | |
| 3085 | R | HpyA45ORF3070P (100% identity) | Hpy1352ORF3080P | |
| 3090 | motility associated factor glycosyltransferase | |||
| 3340 | DNA cytosine methyltransferase | |||
| 3345 | M | M.HpyHPYORF3345AP (100% identity) | M.Hpy1352ORF3345AP | |
| 3350 | IS607 family transposase | |||
| 3355 | transposase | |||
| 3360 | M | M.HpyHPYORF3345BP (100% identity) | M.Hpy1352ORF3345BP | |
| 3365 | S | S.HpyHPYORF3345P (100% identity) | S.Hpy1352ORF3345P | |
| 3370 | R | HpyHPYORF3345P (100% identity) | Hpy1352ORF3345P | |
| 3375 | hydroxyethylthiazole kinase | |||
| 3650 | cadmium-translocating P-type ATPase | |||
| 3655 | S | S.HpyHPYORF3655P (100% identity) | S.Hpy1352ORF3655P | |
| 3660 | outer membrane beta-barrel protein HofF | |||
| 7740 | nickel-binding protein HpnL | |||
| 7745 | S | S.HpyHPYORF7745P (100% identity) | S.Hpy1352ORF7745P | |
| 7750 | formyltetrahydrofolate deformylase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 713 aa hypothetical protein | |||
| 60 | RM | HpyHPYORF55P (100% identity) | Hpy1352ORF60P | |
| 65 | 132 aa hypothetical protein | |||
| 140 | outer membrane protein | |||
| 145 | R | HpyHPYORF145P (100% identity) | CCATC | Hpy1352ORF150P |
| 150 | M | M1.HpyHPYORF145P (100% identity) | CCATC | M1.Hpy1352ORF150P |
| ??? | M | M2.HpyHPYORF145P (100% identity) | CCATC | M2.Hpy1352ORF150P |
| 160 | YjgP/YjgQ family permease | |||
| 285 | ComF family protein | |||
| 290 | RM | HpyHPYORF285P (100% identity) | Hpy1352ORF290P | |
| 295 | S | S.HpyHPYORF285P (100% identity) | S.Hpy1352ORF290P | |
| 300 | DNA polymerase I | |||
| 650 | 67 aa hypothetical protein | |||
| 655 | M | M.HpyNP03XI (100% identity) | TGCA | M.Hpy1352ORF655P |
| 660 | R | HpyHPYORF655P (100% identity) | TGCA | Hpy1352ORF655P |
| 665 | cytochrome c1 | |||
| 1180 | agmatine deiminase | |||
| 1185 | M | M1.HpyHPYORF1190P (100% identity) | CCTC | M1.Hpy1352ORF1185P |
| 1190 | M | M2.HpyHPYORF1190P (100% identity) | CCTC | M2.Hpy1352ORF1185P |
| 1195 | sodium/proline symporter PutP | |||
| 1375 | ACP S-malonyltransferase | |||
| 1385 | R | HpyHPYORF1395P (100% identity) | GATC | Hpy1352ORF1390P |
| 1390 | M | M.HpyHPYORF1395P (100% identity) | GATC | M.Hpy1352ORF1390P |
| 1395 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 2165 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpyHPYORF2170P (100% identity) | TCGA | M.Hpy1352ORF2170P |
| 2175 | 80 aa hypothetical protein | |||
| 2175 | 80 aa hypothetical protein | |||
| ??? | R | HpyHPYORF2190P (100% identity) | Hpy1352ORF2190P | |
| 2190 | M | M.HpyHPYORF2190AP (100% identity) | M.Hpy1352ORF2190AP | |
| 2195 | transposase | |||
| 2200 | IS607 family transposase | |||
| 2205 | M | M.HpyHPYORF2190BP (100% identity) | M.Hpy1352ORF2190BP | |
| 2210 | AAA domain-containing protein | |||
| 3150 | Hop family outer membrane protein HopJ/HopK | |||
| 3155 | M | M.HpyHPYORF3155P (100% identity) | ATTAAT | M.Hpy1352ORF3155P |
| 3160 | glycosyltransferase family 9 protein | |||
| 3165 | translational GTPase TypA | |||
| 3170 | M | M.HpyHPYORF3170P (100% identity) | M.Hpy1352ORF3170P | |
| 3175 | catalase | |||
| 3330 | phosphatase PAP2 family protein | |||
| 3335 | R | HpyHPYORF3340P (100% identity) | Hpy1352ORF3340P | |
| 3340 | M | M.HpyHPYORF3340P (100% identity) | M.Hpy1352ORF3340P | |
| 3345 | type I restriction-modification system subunit | |||
| 4240 | 449 aa hypothetical protein | |||
| 4245 | RM | HpyHPYORF4245P (100% identity) | Hpy1352ORF4245P | |
| 4250 | (Fe-S)-binding protein | |||
| 5145 | flagellar hook protein FlgE | |||
| 5150 | R | HpyHPYORF5155P (100% identity) | GTNNAC | Hpy1352ORF5155P |
| 5155 | M | M.HpyHPYORF5155P (100% identity) | GTNNAC | M.Hpy1352ORF5155P |
| 5160 | ATP-dependent helicase | |||
| 6025 | methyltransferase | |||
| 6030 | M | M.HpyHPYORF6030P (100% identity) | TCNNGA | M.Hpy1352ORF6030P |
| 6035 | R | HpyHPYORF6030P (100% identity) | TCNNGA | Hpy1352ORF6030P |
| 6040 | Laminin subunit alpha-2 precursor | |||
| 6225 | 144 aa hypothetical protein | |||
| ??? | M | M.HpyHPYORF6230P (100% identity) | GCGC | M.Hpy1352ORF6230P |
| 6235 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6510 | outer membrane beta-barrel protein | |||
| 6515 | M | M.HpyHPYORF6515P (100% identity) | TCNGA | M.Hpy1352ORF6515P |
| ??? | R | HpyHPYORF6515P (100% identity) | TCNGA | Hpy1352ORF6515P |
| 6525 | purine-nucleoside phosphorylase | |||
| 6695 | HAD family hydrolase | |||
| 6700 | M | M.HpyA45ORF6685P (100% identity) | CATG | M.Hpy1352ORF6700P |
| 6705 | IceA2 protein | |||
| 7440 | S41 family peptidase | |||
| ??? | R | HpyHPYORF7465P (100% identity) | Hpy1352ORF7455P | |
| 7455 | M | M.HpyHPYORF7465P (54% identity) | M.Hpy1352ORF7455P | |
| 7460 | aminoglycoside O-phosphotransferase | |||
| 7460 | aminoglycoside O-phosphotransferase | |||
| 7465 | M | M.Hpyfe75ORF7180P (44% identity) | M.Hpy1352ORF7465P | |
| 7470 | N-6 DNA methylase | |||
| 7465 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyHPYORF7470P (100% identity) | Hpy1352ORF7470P | |
| 7475 | carboxylating nicotinate-nucleotide | |||
| 7660 | glycosyltransferase family 8 protein | |||
| 7665 | M | M.HpyHPYORF7665P (100% identity) | GAATTC | M.Hpy1352ORF7665P |
| 7670 | R | HpyHPYORF7665P (100% identity) | GAATTC | Hpy1352ORF7665P |
| 7675 | UDP-N-acetylmuramate dehydrogenase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyHPYORF40P (100% identity) | M.Hpy1352ORF40P | |
| 50 | R | HpyHPYORF40P (100% identity) | Hpy1352ORF40P | |
| 55 | 713 aa hypothetical protein | |||
| 4605 | 54 aa hypothetical protein | |||
| ??? | M | M.HpyHPYORF4610P (100% identity) | M.Hpy1352ORF4610P | |
| ??? | R | HpyHPYORF4610P (100% identity) | Hpy1352ORF4610P | |
| 4620 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 7525 | copper response regulator transcription factor | |||
| 7530 | M | M.HpyHPYORF7530P (100% identity) | M.Hpy1352ORF7530P | |
| 7535 | R | HpyHPYORF7530P (100% identity) | Hpy1352ORF7530P | |
| 7540 | rod shape-determining protein MreC | |||
| 7585 | DNA/RNA non-specific endonuclease | |||
| 7590 | M | M.HpyHPYORF7590P (100% identity) | M.Hpy1352ORF7590P | |
| 7595 | R | HpyHPYORF7590P (100% identity) | Hpy1352ORF7590P | |
| 7600 | type III restriction endonuclease subunit R | |||