Helicobacter pylori HPY |
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Putative Helicobacter pylori HPY RM systems
Ref: Butenko,I. et al. unpublished
REBASE ref # 30452
Complete sequence: 1,663,751 bp
GenBank #: CP053396
REBASE acronym: HpyHPY
Org_num: 40405
All begin HK440_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 375 | LPP20 family lipoprotein | |||
| 380 | S | S.HpyA45ORF390P (100% identity) | S.HpyHPYORF385P | |
| 385 | M | M.Hpy9192ORF385P (100% identity) | M.HpyHPYORF385P | |
| 390 | integrase | |||
| 565 | relaxase/mobilization nuclease domain-containing | |||
| 570 | M | M.HpyA45ORF570P (100% identity) | M.HpyHPYORF570P | |
| 575 | R | HpyA45ORF570P (100% identity) | HpyHPYORF570P | |
| 580 | M48 family metallopeptidase | |||
| 3065 | RNA degradosome polyphosphate kinase | |||
| 3075 | S | S.HpyA45ORF3070P (100% identity) | S.HpyHPYORF3080P | |
| 3080 | M | M.HpyA45ORF3070P (100% identity) | M.HpyHPYORF3080P | |
| 3085 | R | Hpy9192ORF3070P (100% identity) | HpyHPYORF3080P | |
| 3090 | motility associated factor glycosyltransferase | |||
| 3340 | DNA cytosine methyltransferase | |||
| 3345 | M | M.HpyA45ORF3335AP (100% identity) | M.HpyHPYORF3345AP | |
| 3350 | IS607 family transposase | |||
| 3355 | transposase | |||
| 3360 | M | M.HpyA45ORF3335BP (100% identity) | M.HpyHPYORF3345BP | |
| 3365 | S | S.HpyA45ORF3335P (100% identity) | S.HpyHPYORF3345P | |
| 3370 | R | HpyA45ORF3335P (100% identity) | HpyHPYORF3345P | |
| 3375 | hydroxyethylthiazole kinase | |||
| 3650 | cadmium-translocating P-type ATPase | |||
| 3655 | S | S.Hpy9192ORF3645P (100% identity) | S.HpyHPYORF3655P | |
| 3660 | outer membrane beta-barrel protein HofF | |||
| 7740 | nickel-binding protein HpnL | |||
| 7745 | S | S.HpyA45ORF7715P (100% identity) | S.HpyHPYORF7745P | |
| 7750 | formyltetrahydrofolate deformylase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 713 aa hypothetical protein | |||
| 55 | RM | HpyA45ORF60P (100% identity) | HpyHPYORF55P | |
| 60 | 132 aa hypothetical protein | |||
| 135 | outer membrane protein | |||
| 140 | R | HpyA45ORF150P (100% identity) | CCATC | HpyHPYORF145P |
| 145 | M | M1.HpyA45ORF150P (100% identity) | CCATC | M1.HpyHPYORF145P |
| ??? | M | M2.HpyA45ORF150P (100% identity) | CCATC | M2.HpyHPYORF145P |
| 155 | YjgP/YjgQ family permease | |||
| 280 | ComF family protein | |||
| 285 | RM | HpyA45ORF290P (100% identity) | HpyHPYORF285P | |
| 290 | S | S.HpyA45ORF290P (100% identity) | S.HpyHPYORF285P | |
| 295 | DNA polymerase I | |||
| 650 | 67 aa hypothetical protein | |||
| 655 | M | M.HpyNP03XI (100% identity) | TGCA | M.HpyHPYORF655P |
| 660 | R | HpyA45ORF655P (100% identity) | TGCA | HpyHPYORF655P |
| 665 | cytochrome c1 | |||
| 1185 | agmatine deiminase | |||
| 1190 | M | M1.HpyA45ORF1185P (100% identity) | CCTC | M1.HpyHPYORF1190P |
| 1195 | M | M2.HpyA45ORF1185P (100% identity) | CCTC | M2.HpyHPYORF1190P |
| 1200 | sodium/proline symporter PutP | |||
| 1380 | ACP S-malonyltransferase | |||
| 1390 | R | HpyA45ORF1390P (100% identity) | GATC | HpyHPYORF1395P |
| 1395 | M | M.HpyA45ORF1390P (100% identity) | GATC | M.HpyHPYORF1395P |
| 1400 | alpha-1,2-fucosyltransferase | |||
| 2165 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpyA45ORF2165P (100% identity) | TCGA | M.HpyHPYORF2170P |
| 2175 | 80 aa hypothetical protein | |||
| 2175 | 80 aa hypothetical protein | |||
| ??? | R | Hpy9192ORF2180P (100% identity) | HpyHPYORF2190P | |
| 2190 | M | M.HpyA45ORF2180AP (100% identity) | M.HpyHPYORF2190AP | |
| 2195 | transposase | |||
| 2200 | IS607 family transposase | |||
| 2205 | M | M.HpyA45ORF2180BP (100% identity) | M.HpyHPYORF2190BP | |
| 2210 | AAA domain-containing protein | |||
| 3150 | Hop family outer membrane protein HopJ/HopK | |||
| 3155 | M | M.HpyA45ORF3145P (100% identity) | ATTAAT | M.HpyHPYORF3155P |
| 3160 | glycosyltransferase family 9 protein | |||
| 3165 | translational GTPase TypA | |||
| 3170 | M | M.HpyA45ORF3160P (100% identity) | M.HpyHPYORF3170P | |
| 3175 | catalase | |||
| 3330 | phosphatase PAP2 family protein | |||
| 3335 | R | HpyA45ORF3330P (100% identity) | HpyHPYORF3340P | |
| 3340 | M | M.HpyA45ORF3330P (100% identity) | M.HpyHPYORF3340P | |
| 3345 | type I restriction-modification system subunit | |||
| 4240 | 449 aa hypothetical protein | |||
| 4245 | RM | HpyA45ORF4235P (100% identity) | HpyHPYORF4245P | |
| 4250 | (Fe-S)-binding protein | |||
| 5145 | flagellar hook protein FlgE | |||
| 5150 | R | HpyA45ORF5145P (100% identity) | GTNNAC | HpyHPYORF5155P |
| 5155 | M | M.HpyA45ORF5145P (100% identity) | GTNNAC | M.HpyHPYORF5155P |
| 5160 | ATP-dependent helicase | |||
| 6025 | methyltransferase | |||
| 6030 | M | M.HpyA45ORF6015P (100% identity) | TCNNGA | M.HpyHPYORF6030P |
| 6035 | R | HpyA45ORF6015P (100% identity) | TCNNGA | HpyHPYORF6030P |
| 6040 | Laminin subunit alpha-2 precursor | |||
| 6225 | 144 aa hypothetical protein | |||
| ??? | M | M.HpyA45ORF6215P (100% identity) | GCGC | M.HpyHPYORF6230P |
| 6235 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6510 | outer membrane beta-barrel protein | |||
| 6515 | M | M.HpyA45ORF6500P (100% identity) | TCNGA | M.HpyHPYORF6515P |
| ??? | R | HpyA45ORF6500P (100% identity) | TCNGA | HpyHPYORF6515P |
| 6525 | purine-nucleoside phosphorylase | |||
| 6695 | HAD family hydrolase | |||
| 6700 | M | M.HpyA45ORF6685P (56% identity) | M.HpyHPYORF6700P | |
| 6705 | aminoglycoside O-phosphotransferase | |||
| 6705 | aminoglycoside O-phosphotransferase | |||
| 6710 | M | M.HpyA45ORF6685P (43% identity) | M.HpyHPYORF6710P | |
| 6715 | IceA2 protein | |||
| 7450 | S41 family peptidase | |||
| ??? | R | HpyA45ORF7440P (100% identity) | GANTC | HpyHPYORF7465P |
| 7465 | M | M.HpyA45ORF7440P (100% identity) | GANTC | M.HpyHPYORF7465P |
| 7470 | N-6 DNA methylase | |||
| 7465 | site-specific DNA-methyltransferase | |||
| ??? | RM | Hpy1352ORF7470P (100% identity) | HpyHPYORF7470P | |
| 7475 | carboxylating nicotinate-nucleotide | |||
| 7660 | glycosyltransferase family 8 protein | |||
| 7665 | M | M.HpyA45ORF7635P (100% identity) | GAATTC | M.HpyHPYORF7665P |
| 7670 | R | HpyA45ORF7635P (100% identity) | GAATTC | HpyHPYORF7665P |
| 7675 | UDP-N-acetylmuramate dehydrogenase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyA45ORF40P (100% identity) | M.HpyHPYORF40P | |
| 45 | R | HpyA45ORF40P (100% identity) | HpyHPYORF40P | |
| 50 | 713 aa hypothetical protein | |||
| 4605 | 54 aa hypothetical protein | |||
| ??? | M | M.HpyA45ORF4600P (100% identity) | M.HpyHPYORF4610P | |
| ??? | R | HpyA45ORF4600P (100% identity) | HpyHPYORF4610P | |
| 4620 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 7525 | copper response regulator transcription factor | |||
| 7530 | M | M.HpyA45ORF7505P (100% identity) | M.HpyHPYORF7530P | |
| 7535 | R | HpyA45ORF7505P (100% identity) | HpyHPYORF7530P | |
| 7540 | rod shape-determining protein MreC | |||
| 7585 | DNA/RNA non-specific endonuclease | |||
| 7590 | M | M.HpyA45ORF7565P (100% identity) | M.HpyHPYORF7590P | |
| 7595 | R | HpyA45ORF7565P (100% identity) | HpyHPYORF7590P | |
| 7600 | type III restriction endonuclease subunit R | |||