Helicobacter pylori HP9192 |
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Putative Helicobacter pylori HP9192 RM systems
Ref: Butenko,I. et al. unpublished
REBASE ref # 30452
Complete sequence: 1,662,371 bp
GenBank #: CP053392
REBASE acronym: Hpy9192
Org_num: 40404
All begin HK442_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 375 | LPP20 family lipoprotein | |||
| 380 | S | S.HpyHPYORF385P (100% identity) | S.Hpy9192ORF385P | |
| 385 | M | M.HpyHPYORF385P (100% identity) | M.Hpy9192ORF385P | |
| 390 | integrase | |||
| 555 | relaxase/mobilization nuclease domain-containing | |||
| 560 | M | M.HpyHPYORF570P (100% identity) | M.Hpy9192ORF560P | |
| 565 | R | HpyHPYORF570P (100% identity) | Hpy9192ORF560P | |
| 570 | M48 family metallopeptidase | |||
| 3055 | RNA degradosome polyphosphate kinase | |||
| 3065 | S | S.HpyHPYORF3080P (100% identity) | S.Hpy9192ORF3070P | |
| 3070 | M | M.HpyHPYORF3080P (100% identity) | M.Hpy9192ORF3070P | |
| 3075 | R | HpyHPYORF3080P (100% identity) | Hpy9192ORF3070P | |
| 3080 | motility associated factor glycosyltransferase | |||
| 3330 | DNA cytosine methyltransferase | |||
| 3335 | M | M.HpyHPYORF3345AP (100% identity) | M.Hpy9192ORF3335AP | |
| 3340 | IS607 family transposase | |||
| 3345 | transposase | |||
| 3350 | M | M.HpyHPYORF3345BP (100% identity) | M.Hpy9192ORF3335BP | |
| 3355 | S | S.HpyHPYORF3345P (100% identity) | S.Hpy9192ORF3335P | |
| 3360 | R | HpyHPYORF3345P (100% identity) | Hpy9192ORF3335P | |
| 3365 | hydroxyethylthiazole kinase | |||
| 3640 | cadmium-translocating P-type ATPase | |||
| 3645 | S | S.HpyHPYORF3655P (100% identity) | S.Hpy9192ORF3645P | |
| 3650 | outer membrane beta-barrel protein HofF | |||
| 7725 | nickel-binding protein HpnL | |||
| 7730 | S | S.HpyHPYORF7745P (100% identity) | S.Hpy9192ORF7730P | |
| 7735 | formyltetrahydrofolate deformylase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 713 aa hypothetical protein | |||
| 55 | RM | HpyHPYORF55P (100% identity) | Hpy9192ORF55P | |
| 60 | 132 aa hypothetical protein | |||
| 135 | outer membrane protein | |||
| 140 | R | HpyHPYORF145P (100% identity) | CCATC | Hpy9192ORF145P |
| 145 | M | M1.HpyHPYORF145P (100% identity) | CCATC | M1.Hpy9192ORF145P |
| ??? | M | M2.HpyHPYORF145P (100% identity) | CCATC | M2.Hpy9192ORF145P |
| 155 | YjgP/YjgQ family permease | |||
| 280 | ComF family protein | |||
| 285 | RM | HpyHPYORF285P (100% identity) | Hpy9192ORF285P | |
| 290 | S | S.HpyHPYORF285P (100% identity) | S.Hpy9192ORF285P | |
| 295 | DNA polymerase I | |||
| 640 | 67 aa hypothetical protein | |||
| 645 | M | M.HpyNP03XI (100% identity) | TGCA | M.Hpy9192ORF645P |
| 650 | R | HpyHPYORF655P (100% identity) | TGCA | Hpy9192ORF645P |
| 655 | cytochrome c1 | |||
| 1170 | agmatine deiminase | |||
| 1175 | M | M1.HpyHPYORF1190P (100% identity) | CCTC | M1.Hpy9192ORF1175P |
| 1180 | M | M2.HpyHPYORF1190P (100% identity) | CCTC | M2.Hpy9192ORF1175P |
| 1185 | sodium/proline symporter PutP | |||
| 2155 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpyHPYORF2170P (100% identity) | TCGA | M.Hpy9192ORF2160P |
| 2165 | 80 aa hypothetical protein | |||
| 2165 | 80 aa hypothetical protein | |||
| ??? | R | HpyHPYORF2190P (100% identity) | Hpy9192ORF2180P | |
| 2180 | M | M.HpyHPYORF2190AP (100% identity) | M.Hpy9192ORF2180AP | |
| 2185 | transposase | |||
| 2190 | IS607 family transposase | |||
| 2195 | M | M.HpyHPYORF2190BP (100% identity) | M.Hpy9192ORF2180BP | |
| 2200 | AAA domain-containing protein | |||
| 3140 | Hop family outer membrane protein HopJ/HopK | |||
| 3145 | M | M.HpyHPYORF3155P (100% identity) | ATTAAT | M.Hpy9192ORF3145P |
| 3150 | glycosyltransferase family 9 protein | |||
| 3155 | translational GTPase TypA | |||
| 3160 | M | M.HpyHPYORF3170P (100% identity) | M.Hpy9192ORF3160P | |
| 3165 | catalase | |||
| 3320 | phosphatase PAP2 family protein | |||
| 3325 | R | HpyHPYORF3340P (100% identity) | Hpy9192ORF3330P | |
| 3330 | M | M.HpyHPYORF3340P (100% identity) | M.Hpy9192ORF3330P | |
| 3335 | type I restriction-modification system subunit | |||
| 4230 | 449 aa hypothetical protein | |||
| 4235 | RM | HpyHPYORF4245P (100% identity) | Hpy9192ORF4235P | |
| 4240 | (Fe-S)-binding protein | |||
| 5135 | flagellar hook protein FlgE | |||
| 5140 | R | HpyHPYORF5155P (100% identity) | GTNNAC | Hpy9192ORF5145P |
| 5145 | M | M.HpyHPYORF5155P (100% identity) | GTNNAC | M.Hpy9192ORF5145P |
| 5150 | ATP-dependent helicase | |||
| 6015 | methyltransferase | |||
| 6020 | M | M.HpyHPYORF6030P (100% identity) | TCNNGA | M.Hpy9192ORF6020P |
| 6025 | R | HpyHPYORF6030P (100% identity) | TCNNGA | Hpy9192ORF6020P |
| 6030 | Laminin subunit alpha-2 precursor | |||
| 6215 | 144 aa hypothetical protein | |||
| ??? | M | M.HpyHPYORF6230P (100% identity) | GCGC | M.Hpy9192ORF6220P |
| 6225 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6500 | outer membrane beta-barrel protein | |||
| 6505 | M | M.HpyHPYORF6515P (100% identity) | TCNGA | M.Hpy9192ORF6505P |
| ??? | R | HpyHPYORF6515P (100% identity) | TCNGA | Hpy9192ORF6505P |
| 6515 | purine-nucleoside phosphorylase | |||
| 6685 | HAD family hydrolase | |||
| 6690 | M | M.HpyA45ORF6685P (100% identity) | CATG | M.Hpy9192ORF6690P |
| 6695 | IceA2 protein | |||
| 7430 | S41 family peptidase | |||
| ??? | R | HpyHPYORF7465P (100% identity) | GANTC | Hpy9192ORF7445P |
| 7445 | M | M.HpyHPYORF7465P (100% identity) | GANTC | M.Hpy9192ORF7445P |
| 7450 | DNA methyltransferase | |||
| 7450 | DNA methyltransferase | |||
| 7455 | RM | HpyA45ORF7445P (92% identity) | Hpy9192ORF7455P | |
| 7460 | carboxylating nicotinate-nucleotide | |||
| 7645 | glycosyltransferase family 8 protein | |||
| 7650 | M | M.HpyHPYORF7665P (100% identity) | GAATTC | M.Hpy9192ORF7650P |
| 7655 | R | HpyHPYORF7665P (100% identity) | GAATTC | Hpy9192ORF7650P |
| 7660 | UDP-N-acetylmuramate dehydrogenase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyHPYORF40P (100% identity) | M.Hpy9192ORF40P | |
| 45 | R | HpyHPYORF40P (100% identity) | Hpy9192ORF40P | |
| 50 | 713 aa hypothetical protein | |||
| 4595 | 54 aa hypothetical protein | |||
| ??? | M | M.HpyHPYORF4610P (100% identity) | M.Hpy9192ORF4600P | |
| ??? | R | HpyHPYORF4610P (100% identity) | Hpy9192ORF4600P | |
| 4610 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 7510 | copper response regulator transcription factor | |||
| 7515 | M | M.HpyHPYORF7530P (100% identity) | M.Hpy9192ORF7515P | |
| 7520 | R | HpyHPYORF7530P (100% identity) | Hpy9192ORF7515P | |
| 7525 | rod shape-determining protein MreC | |||
| 7570 | DNA/RNA non-specific endonuclease | |||
| 7575 | M | M.HpyHPYORF7590P (100% identity) | M.Hpy9192ORF7575P | |
| 7580 | R | HpyHPYORF7590P (100% identity) | Hpy9192ORF7575P | |
| 7585 | type III restriction endonuclease subunit R | |||