Escherichia coli SCU-306 |
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Putative Escherichia coli SCU-306 RM systems
Ref: Stephens,C. et al. unpublished
REBASE ref # 30306
| Sequence length: | GenBank #: | |
| Chromosome: | 5,029,448 bp | CP053231 |
| plasmid pSCU-306-2: | 112,229 bp | CP053233 |
REBASE acronym: EcoSCU306
Org_num: 40071
All begin HHJ44_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 425 | phosphohydrolase | |||
| 430 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoSCU306DcmP |
| 435 | V | V.EcosC25DcmP (100% identity) | V.EcoSCU306DcmP | |
| 440 | drug/metabolite exporter YedA | |||
| 3685 | DUF1737 domain-containing protein | |||
| 3705 | M | M.SboBSORF1444P (100% identity) | A | M.EcoSCU306ORF3705P |
| 3710 | TrmB family transcriptional regulator | |||
| 6225 | phage portal protein | |||
| 6230 | R | Sen24760ORF10430P (99% identity) | EcoSCU306ORF6235P | |
| 6235 | M | M.Sen24760ORF10430P (100% identity) | M.EcoSCU306ORF6235P | |
| 6240 | DinI family protein | |||
| 6250 | replication endonuclease | |||
| 6255 | M | M.EcoJH51ORF15240P (100% identity) | GATC | M.EcoSCU306ORF6255P |
| 6260 | TraR/DksA family transcriptional regulator | |||
| 9685 | LexA family transcriptional regulator | |||
| 9690 | M | M.EcoY26ORF4515P (100% identity) | GATC | M.EcoSCU306ORF9690P |
| 9695 | PerC family transcriptional regulator | |||
| 13265 | DNA-binding transcriptional regulator Fis | |||
| 13270 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoSCU306ORF13270P |
| 13275 | DUF2556 family protein | |||
| 13860 | ribulose-phosphate 3-epimerase | |||
| 13865 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoSCU306DamP |
| 13870 | cell division protein DamX | |||
| 19125 | 97 aa hypothetical protein | |||
| 19130 | R | EcoSCU122ORF19955P (100% identity) | EcoSCU306ORF19130P | |
| 19135 | 607 aa hypothetical protein | |||
| 19140 | histidine kinase | |||
| 19145 | M | M.Sen5773ORF4471P (100% identity) | RCCGGY | M.EcoSCU306ORF19145P |
| 19150 | 174 aa hypothetical protein | |||
| 19400 | IS3 family transposase | |||
| 19405 | M | M2.EcosEC4ORF20110P (99% identity) | GGTCTC | M1.EcoSCU306ORF19405P |
| 19410 | M | M.EcoSME98ORF8080P (42% identity) | GGTCTC | M2.EcoSCU306ORF19405P |
| 19415 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoSCU306ORF19405P |
| 19420 | McrC family protein | |||
| 19875 | 95 aa hypothetical protein | |||
| 19880 | M | M.EcoCP55ORF24105P (72% identity) | M.EcoSCU306ORF19880P | |
| 19885 | LexA family transcriptional regulator | |||
| 19915 | 63 aa hypothetical protein | |||
| 19920 | M | M.Ecos142ORF20090P (62% identity) | M.EcoSCU306ORF19920P | |
| 19925 | 42 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9485 | DinI-like family protein | |||
| 9490 | R | EspFAAGmrSDP (100% identity) | EcoSCU306GmrSDP | |
| 9495 | recombinase family protein | |||
| 19415 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 19420 | R | EcosS9McrCP (100% identity) | EcoSCU306McrCP | |
| 19425 | R | EcosS3McrBP (100% identity) | EcoSCU306McrBP | |
| 19430 | glycosyltransferase family 2 protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4565 | NinE family protein | |||
| 4570 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoSCU306ORF4570P |
| 4575 | recombination protein NinB | |||
| plasmid pSCU-306-2 | ||||
| 25525 | 76 aa hypothetical protein | |||
| 25530 | M | M.Sso524ORF460P (100% identity) | M.EcoSCU306ORF25530P | |
| 25535 | 269 aa hypothetical protein | |||