Escherichia coli SCU-106 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli SCU-106 RM systems
Ref: Stephens,C. et al. unpublished
REBASE ref # 30306
| Sequence length: | GenBank #: | |
| Chromosome: | 5,186,905 bp | CP053234 |
| plasmid pSCU-106-1: | 159,399 bp | CP053235 |
REBASE acronym: EcoSCU106
Org_num: 40058
All begin HHJ24_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9545 | DUF45 domain-containing protein | |||
| 9550 | M | M.Ecostr10ORF18570P (100% identity) | M.EcoSCU106ORF9550P | |
| 9555 | S | S.Ecostr10ORF18570P (100% identity) | S.EcoSCU106ORF9550P | |
| 9560 | 61 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1545 | recombination protein NinB | |||
| 1550 | M | M.SflN97ORF15810P (100% identity) | GATC | M.EcoSCU106ORF1550P |
| 1555 | NinE family protein | |||
| 5065 | phosphohydrolase | |||
| 5070 | M | M.SenHNK130DcmP (99% identity) | CCWGG | M.EcoSCU106DcmP |
| 5075 | V | V.SflFF64DcmP (100% identity) | V.EcoSCU106DcmP | |
| 5080 | drug/metabolite exporter YedA | |||
| 9475 | HNH endonuclease | |||
| 9480 | R | SflN101ORF11875P (100% identity) | EcoSCU106ORF9480P | |
| 9485 | 332 aa hypothetical protein | |||
| 9500 | BREX system P-loop protein BrxC | |||
| 9505 | RM | EcoST130ORF2660P (99% identity) | EcoSCU106ORF9505P | |
| 9510 | BREX-1 system phosphatase PglZ type A | |||
| 15030 | cell division protein DamX | |||
| 15035 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoSCU106DamP |
| 15040 | ribulose-phosphate 3-epimerase | |||
| 15590 | DUF2556 family protein | |||
| 15595 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoSCU106ORF15595P |
| 15600 | DNA-binding transcriptional regulator Fis | |||
| 19225 | TraR/DksA family transcriptional regulator | |||
| 19230 | M | M.Ecos4422ORF14175P (99% identity) | GATC | M.EcoSCU106ORF19230P |
| 19235 | replication endonuclease | |||
| 24150 | TrmB family transcriptional regulator | |||
| 24155 | M | M.EcoTob1ORF18280P (99% identity) | M.EcoSCU106ORF24155P | |
| 24170 | cell envelope integrity protein TolA | |||
| plasmid pSCU-106-1 | ||||
| 25565 | IS110-like element ISShdy1 family transposase | |||
| 25570 | M | M.Ecos135ORF27020P (99% identity) | SAY | M.EcoSCU106ORF25570P |
| 25575 | 73 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3835 | 72 aa hypothetical protein | |||
| 3840 | M | M.EcoC0140ORF16625P (100% identity) | M.EcoSCU106ORF3840P | |
| 3845 | 3-5 exoribonuclease | |||