Bacteroides dorei JR01 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Bacteroides dorei JR01 RM systems
Ref: Russell,J.T. unpublished
REBASE ref # 29777
Complete sequence: 5,511,747 bp
GenBank #: CP046424
REBASE acronym: BdoJR01
Org_num: 39850
All begin GN305_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 16785 | cell surface protein | |||
| 16790 | S | S3.Pdo3C03ORF2038P (100% identity) | S3.BdoJR01IP | |
| 16795 | restriction endonuclease subunit S | |||
| 16800 | tyrosine-type recombinase/integrase | |||
| 16805 | S | S2.Pdo3716YORF13100P (100% identity) | GAAGNNNNNNNTRRG | S2.BdoJR01I |
| 16810 | DUF1016 family protein | |||
| 16815 | tyrosine-type recombinase/integrase | |||
| 16820 | tyrosine-type recombinase/integrase | |||
| 16825 | tyrosine-type recombinase/integrase | |||
| 16835 | S | S1.BdoJR03IP (100% identity) | S1.BdoJR01IP | |
| 16840 | M | M.Pdo3716YORF13100P (100% identity) | GAAGNNNNNNNTRRG | M.BdoJR01I |
| 16845 | R | Pdo1046IIIP (100% identity) | GAAGNNNNNNNTRRG | BdoJR01IP |
| 16850 | C | C.Pvu201ORF22395P (100% identity) | C.BdoJR01IP | |
| 16855 | DUF4357 domain-containing protein | |||
| 18725 | S-adenosylmethionine:tRNA | |||
| 18730 | M | M.PmeBin22ORFCP (100% identity) | RAACNNNNNNRTTG | M.BdoJR01II |
| 18735 | S | S1.Pdo3716YORF6360P (100% identity) | RAACNNNNNNRTTG | S.BdoJR01II |
| 18740 | DUF1016 family protein | |||
| 18745 | tyrosine-type recombinase/integrase | |||
| 18750 | tyrosine-type recombinase/integrase | |||
| 18755 | tyrosine-type recombinase/integrase | |||
| 18760 | DUF1016 family protein | |||
| 18765 | R | Pdo17855ORF1705P (100% identity) | RAACNNNNNNRTTG | BdoJR01IIP |
| 18770 | WYL domain-containing protein | |||
| 21125 | 504 aa hypothetical protein | |||
| 21130 | R | Bfr4ORF2110P (100% identity) | BdoJR01ORF21160P | |
| 21135 | S | S1.Bth576ORF2630P (49% identity) | S3.BdoJR01ORF21160P | |
| 21140 | S | S3.BdoJR02ORF1405P (100% identity) | S2.BdoJR01ORF21160P | |
| 21145 | tyrosine-type recombinase/integrase | |||
| 21150 | DNA damage-inducible protein D | |||
| 21155 | S | S1.Bth576ORF2630P (56% identity) | S1.BdoJR01ORF21160P | |
| 21160 | M | M2.Bth576ORF2630P (100% identity) | M2.BdoJR01ORF21160P | |
| 21165 | M | M1.Bth576ORF2630P (100% identity) | M1.BdoJR01ORF21160P | |
| 21170 | C | C.Msa17ORFG1P (100% identity) | C.BdoJR01ORF21160P | |
| 21175 | recombinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6735 | 511 aa hypothetical protein | |||
| 6740 | M | M.BdoJR03ORF6340P (100% identity) | M.BdoJR01ORF6740P | |
| 6745 | DUF4143 domain-containing protein | |||
| 6850 | DNA primase | |||
| ??? | M | M.PmeBin28ORFCP (100% identity) | M.BdoJR01ORF6855P | |
| 6865 | TraM recognition domain-containing protein | |||
| 7250 | toxin Bro | |||
| 7260 | M | M.PmeBin28ORFBP (100% identity) | M.BdoJR01ORF7260P | |
| 7265 | 115 aa hypothetical protein | |||
| 13655 | conjugative transposon protein TraN | |||
| 13660 | M | M.Bth119ORF13585P (100% identity) | M.BdoJR01ORF13660P | |
| 13665 | 117 aa hypothetical protein | |||
| 13690 | DUF5045 domain-containing protein | |||
| 13695 | M | M.Bth266ORF14520P (100% identity) | M.BdoJR01ORF13695P | |
| 13700 | 240 aa hypothetical protein | |||
| 14670 | conjugal transfer protein TraO | |||
| 14675 | M | M.Pdo1046ORF15070P (100% identity) | M.BdoJR01ORF14675P | |
| 14680 | DUF3872 domain-containing protein | |||
| 16005 | alpha-amylase | |||
| 16010 | R | Pdo3C03ORF1868P (100% identity) | BdoJR01ORF16010P | |
| 16015 | 71 aa hypothetical protein | |||