Anabaena variabilis ATCC 29413 |
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Putative Anabaena variabilis ATCC 29413 RM systems
Ref: Copeland,A. et al. unpublished
REBASE ref # 18337
| Sequence length: | GenBank #: | |
| Chromosome: | 6,365,727 bp | CP000117 (NC_007413) |
| plasmid A: | 366,354 bp | CP000119 (NC_007410) |
| plasmid C: | 300,758 bp | CP000121 (NC_007412) |
| plasmid D: | 27,051 bp | KC733807 |
REBASE acronym: AvaB
Org_num: 4179
All begin Ava_, Ava_B, Ava_C, AvaD_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1155 | metal-dependent hydrolase-like protein | |||
| 1156 | R | Tva0441ORF11055P (100% identity) | AvaBORF1159P | |
| 1157 | Predicted transcriptional regulator | |||
| 1158 | S | S.Tva0441ORF11055P (100% identity) | S.AvaBORF1159P | |
| 1159 | M | M.Tva0441ORF11055P (100% identity) | M.AvaBORF1159P | |
| 1160 | Possible Transcriptional Regulator, MerR family | |||
| 3266 | 114 aa conserved hypothetical protein | |||
| 3267 | S | S.Tva0441ORF22195P (100% identity) | S.AvaBORF3271P | |
| 3268 | 72 aa conserved hypothetical protein | |||
| 3269 | PilT protein-like protein | |||
| 3270 | 86 aa conserved hypothetical protein | |||
| 3271 | M | M.Tva0441ORF22195P (100% identity) | M.AvaBORF3271P | |
| 3272 | 330 aa conserved hypothetical protein | |||
| 3273 | R | Tva0441ORF22195P (100% identity) | AvaBORF3271P | |
| 3274 | transcriptional regulator, AbrB family | |||
| 3497 | 97 aa hypothetical protein | |||
| 3498 | M | M.Tva0441ORF23360P (100% identity) | M.AvaBORF3498P | |
| 3499 | S | S.Tva0441ORF23360P (100% identity) | S.AvaBORF3498P | |
| 3500 | Protein of unknown function UPF0175 | |||
| 3501 | 165 aa conserved hypothetical protein | |||
| 3502 | R | Tva0441ORF23360P (100% identity) | AvaBORF3498P | |
| 3503 | AAA ATPase, central region | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 100 | Protein of unknown function DUF820 | |||
| 101 | M | M.Tva0441ORF5640P (100% identity) | CGATCG | M.AvaBORF101P |
| 102 | 286 aa conserved hypothetical protein | |||
| 730 | Deoxyribose-phosphate aldolase | |||
| 731 | M | M.Tva0441ORF8875P (100% identity) | RCCGGY | M.AvaBORF731P |
| 732 | 481 aa conserved hypothetical protein | |||
| 1325 | SNF2-related Helicase | |||
| 1326 | RM | Tva0441ORF11885P (100% identity) | AvaBORF1326P | |
| 1327 | Transposase IS200-like protein | |||
| 2189 | type III restriction enzyme, res subunit | |||
| 2190 | M | M.Tva0441ORF16250P (100% identity) | M.AvaBORF2190P | |
| 2191 | 121 aa conserved hypothetical protein | |||
| 2662 | Protein of unknown function DUF427 | |||
| 2663 | M | M.Tva0441ORF19010P (100% identity) | GATC | M.AvaBORF2663P |
| 2664 | Protein of unknown function DUF751 | |||
| 3013 | 70 aa conserved hypothetical protein | |||
| 3014 | M | M.Tva0441ORF20815P (100% identity) | CAGCTG | M.AvaBORF3014P |
| 3015 | Cyanase | |||
| 3179 | 88 aa conserved hypothetical protein | |||
| 3180 | R | Tva0441ORF21730P (100% identity) | CYCGRG | AvaBORF3181P |
| 3181 | M | M.Tva0441ORF21730P (100% identity) | CYCGRG | M.AvaBORF3181P |
| 3182 | Peptidases M20 and M42 | |||
| 4358 | signal recognition particle subunit FFH/SRP54 | |||
| 4359 | M | M.AvrII (100% identity) | CCTAGG | M.AvaBORF4359P |
| 4360 | R | M.Tva0441ORF1540P (42% identity) | CCTAGG | AvaBORF4359P |
| 4361 | urea-binding protein | |||
| 4406 | 263 aa conserved hypothetical protein | |||
| 4407 | M | M.Tva0441ORF1780P (100% identity) | GGCC | M.AvaBORF4407P |
| 4408 | anthranilate phosphoribosyltransferase | |||
| plasmid A | ||||
| 329 | 130 aa conserved hypothetical protein | |||
| 330 | M | M.Tva0441ORF28115P (100% identity) | YGGCCR | M.AvaBORF330P |
| 331 | Protein of unknown function DUF1392 | |||
| plasmid C | ||||
| 222 | 184 aa conserved hypothetical protein | |||
| 223 | RM | Tva0441ORF29290P (100% identity) | AvaBORF223P | |
| 224 | ATPase | |||
| 231 | 195 aa conserved hypothetical protein | |||
| 232 | M | M.Tva0441ORF29245P (95% identity) | M.AvaBORF232P | |
| 233 | Type III restriction enzyme, res subunit | |||
| plasmid D | ||||
| 1 | RM | Tva0441ORF29585P (100% identity) | AvaBORF1P | |
| 2 | S | S.AvrORFOP (100% identity) | S.AvaBORF1P | |
| 3 | ParA-like plasmid partition protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid A | ||||
| 90 | 706 aa conserved hypothetical protein | |||
| 91 | R | Tva0441MrrP (100% identity) | AvaBMrrP | |
| 92 | 119 aa conserved hypothetical protein | |||