Salmonella enterica subsp. enterica serovar Indiana SI67 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Indiana SI67 RM systems
Ref: Chen,Z. unpublished
REBASE ref # 29897
| Sequence length: | GenBank #: | |
| Chromosome: | 4,817,294 bp | CP050783 |
| plasmid pSI67-1: | 255,307 bp | CP050784 |
REBASE acronym: SenSI167
Org_num: 41095
All begin HEC76_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3210 | IS3 family transposase | |||
| 3215 | M | M.EcoTHO010ORF6730P (100% identity) | M.SenSI167ORF3215P | |
| 3220 | S | S.Sen102ORF23330P (100% identity) | S.SenSI167ORF3215P | |
| 3225 | DUF4268 domain-containing protein | |||
| 3230 | R | Sen102ORF23330P (100% identity) | SenSI167ORF3215P | |
| 3235 | ATP-binding protein | |||
| 4065 | transposase | |||
| 4070 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | SenSI167ORF4075P |
| 4075 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.SenSI167ORF4075P |
| 4080 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.SenSI167ORF4075P |
| 4085 | AAA family ATPase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1740 | cell division protein DamX | |||
| 1745 | M | M.StyTDamP (100% identity) | GATC | M.SenSI167DamP |
| 1750 | ribulose-phosphate 3-epimerase | |||
| 2235 | DUF2556 family protein | |||
| 2240 | M | M.Sensp14178ORF2230P (100% identity) | ATGCAT | M.SenSI167ORF2240P |
| 2245 | DNA-binding transcriptional regulator Fis | |||
| 9725 | phosphohydrolase | |||
| 9730 | M | M.SspZ54DcmP (100% identity) | CCWGG | M.SenSI167DcmP |
| 9735 | V | V.Sensp14178DcmP (100% identity) | V.SenSI167DcmP | |
| 9740 | drug/metabolite exporter YedA | |||
| 20025 | YebC/PmpR family DNA-binding transcriptional | |||
| 20030 | R | Sensp14178ORF19855P (100% identity) | SenSI167ORF20030P | |
| 20035 | 347 aa hypothetical protein | |||
| 20070 | RNA polymerase subunit sigma | |||
| 20075 | R | Sens733ORF18925P (100% identity) | SenSI167ORF20075P | |
| 20080 | malate transporter | |||
| plasmid pSI67-1 | ||||
| 23915 | 55 aa hypothetical protein | |||
| 23920 | M | M.YpsF1ORFCP (100% identity) | M.SenSI167ORF23920P | |
| 23925 | thermonuclease family protein | |||
| 24335 | 48 aa hypothetical protein | |||
| 24340 | M | M.YpsF1ORFBP (100% identity) | M.SenSI167ORF24340P | |
| 24345 | 202 aa hypothetical protein | |||
| 24455 | DNA-binding protein | |||
| 24460 | M | M.YpsF1ORFDP (100% identity) | M.SenSI167ORF24460P | |
| 24465 | 284 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17410 | 33 aa hypothetical protein | |||
| 17415 | R | Sensp14154ORF17330P (100% identity) | CAGAG | SenSI167ORF17425P |
| 17420 | IS1 family transposase | |||
| 17425 | M | M.Sensp14152ORF17835P (100% identity) | CAGAG | M.SenSI167ORF17425P |
| 17430 | MFS transporter | |||
| 20100 | S8 family peptidase | |||
| 20105 | M | M.Sensp14178ORF19930P (100% identity) | CGGAAC | M.SenSI167ORF20105P |
| 20110 | R | Sensp14178ORF19930P (100% identity) | CGGAAC | SenSI167ORF20105P |
| 20115 | integrase arm-type DNA-binding domain-containing | |||