Salmonella enterica subsp. enterica serovar Indiana SI170 |
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Putative Salmonella enterica subsp. enterica serovar Indiana SI170 RM systems
Ref: Chen,Z. unpublished
REBASE ref # 29897
| Sequence length: | GenBank #: | |
| Chromosome: | 4,813,873 bp | CP050760 |
| plasmid pSI170-1: | 214,820 bp | CP050761 |
REBASE acronym: SenSI170
Org_num: 41091
All begin HEC83_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3655 | IS66 family transposase | |||
| 3660 | M | M.Ecos67ORF18255P (100% identity) | M.SenSI170ORF3660P | |
| 3665 | AAA family ATPase | |||
| 3670 | S | S.Ecos67ORF18255P (100% identity) | S2.SenSI170ORF3660P | |
| 3675 | R | Ecos135ORF23155P (100% identity) | SenSI170ORF3660P | |
| 3680 | IS3 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1740 | cell division protein DamX | |||
| 1745 | M | M.StyTDamP (100% identity) | GATC | M.SenSI170DamP |
| 1750 | ribulose-phosphate 3-epimerase | |||
| 2235 | DUF2556 family protein | |||
| 2240 | M | M.Sensp14178ORF2230P (100% identity) | ATGCAT | M.SenSI170ORF2240P |
| 2245 | DNA-binding transcriptional regulator Fis | |||
| 3155 | DUF3850 domain-containing protein | |||
| 3160 | M | M.SspZ54ORF6040P (100% identity) | M.SenSI170ORF3160P | |
| 3165 | replication endonuclease | |||
| 3340 | TraR/DksA family transcriptional regulator | |||
| 3345 | M | M.SspZ54ORF6265P (100% identity) | M.SenSI170ORF3345P | |
| 3350 | replication endonuclease | |||
| 9895 | phosphohydrolase | |||
| 9900 | M | M.SspZ54DcmP (100% identity) | CCWGG | M.SenSI170DcmP |
| 9905 | V | V.Sensp14178DcmP (100% identity) | V.SenSI170DcmP | |
| 9910 | drug/metabolite exporter YedA | |||
| 20025 | YebC/PmpR family DNA-binding transcriptional | |||
| 20030 | R | Sensp14178ORF19855P (100% identity) | SenSI170ORF20030P | |
| 20035 | 347 aa hypothetical protein | |||
| 20070 | RNA polymerase subunit sigma | |||
| 20075 | R | Sens733ORF18925P (100% identity) | SenSI170ORF20075P | |
| 20080 | malate transporter | |||
| plasmid pSI170-1 | ||||
| 23660 | 55 aa hypothetical protein | |||
| 23665 | M | M.YpsF1ORFCP (100% identity) | M.SenSI170ORF23665P | |
| 23670 | thermonuclease family protein | |||
| 24155 | 48 aa hypothetical protein | |||
| 24160 | M | M.YpsF1ORFBP (100% identity) | M.SenSI170ORF24160P | |
| 24165 | 202 aa hypothetical protein | |||
| 24265 | DNA-binding protein | |||
| 24270 | M | M.YpsF1ORFDP (100% identity) | M.SenSI170ORF24270P | |
| 24275 | 284 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17755 | 33 aa hypothetical protein | |||
| 17760 | R | Sensp14154ORF17330P (99% identity) | CAGAG | SenSI170ORF17765P |
| 17765 | M | M.Sensp14178ORF17290P (100% identity) | CAGAG | M.SenSI170ORF17765P |
| 17770 | MFS transporter | |||
| 20100 | S8 family peptidase | |||
| 20105 | M | M.Sensp14178ORF19930P (100% identity) | CGGAAC | M.SenSI170ORF20105P |
| 20110 | R | Sensp14178ORF19930P (100% identity) | CGGAAC | SenSI170ORF20105P |
| 20115 | integrase arm-type DNA-binding domain-containing | |||