Salmonella enterica subsp. enterica serovar Indiana SI96 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Indiana SI96 RM systems
Ref: Chen,Z. unpublished
REBASE ref # 29897
| Sequence length: | GenBank #: | |
| Chromosome: | 4,782,837 bp | CP050777 |
| plasmid pSI96-1: | 190,811 bp | CP050778 |
REBASE acronym: SenSI196
Org_num: 41097
All begin HEC78_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1750 | cell division protein DamX | |||
| 1755 | M | M.StyTDamP (100% identity) | GATC | M.SenSI196DamP |
| 1760 | ribulose-phosphate 3-epimerase | |||
| 2245 | DUF2556 family protein | |||
| 2250 | M | M.Sensp14178ORF2230P (100% identity) | ATGCAT | M.SenSI196ORF2250P |
| 2255 | DNA-binding transcriptional regulator Fis | |||
| 3160 | DUF3850 domain-containing protein | |||
| 3165 | M | M.SspZ54ORF6040P (100% identity) | M.SenSI196ORF3165P | |
| 3170 | replication endonuclease | |||
| 9245 | phosphohydrolase | |||
| 9250 | M | M.SspZ54DcmP (100% identity) | CCWGG | M.SenSI196DcmP |
| 9255 | V | V.Sensp14178DcmP (100% identity) | V.SenSI196DcmP | |
| 9260 | drug/metabolite exporter YedA | |||
| 17845 | regulator | |||
| 17850 | M | M.SenSI115ORF17830P (100% identity) | M.SenSI196ORF17850P | |
| 17855 | DNA methyltransferase | |||
| 17850 | class I SAM-dependent methyltransferase | |||
| 17855 | M | M.SenSI115ORF17835P (100% identity) | M.SenSI196ORF17855P | |
| 17860 | 74 aa hypothetical protein | |||
| 20035 | YebC/PmpR family DNA-binding transcriptional | |||
| 20040 | R | Sensp14178ORF19855P (100% identity) | SenSI196ORF20040P | |
| 20045 | 347 aa hypothetical protein | |||
| 20080 | RNA polymerase subunit sigma | |||
| 20085 | R | Sens733ORF18925P (100% identity) | SenSI196ORF20085P | |
| 20090 | malate transporter | |||
| plasmid pSI96-1 | ||||
| 23375 | 284 aa hypothetical protein | |||
| 23380 | M | M.YpsF1ORFDP (100% identity) | M.SenSI196ORF23380P | |
| 23385 | DNA-binding protein | |||
| 23490 | 202 aa hypothetical protein | |||
| 23495 | M | M.YpsF1ORFBP (100% identity) | M.SenSI196ORF23495P | |
| 23500 | 48 aa hypothetical protein | |||
| 23730 | thermonuclease family protein | |||
| 23735 | M | M.YpsF1ORFCP (100% identity) | M.SenSI196ORF23735P | |
| 23740 | 55 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17095 | 33 aa hypothetical protein | |||
| 17100 | R | Sensp14154ORF17330P (100% identity) | CAGAG | SenSI196ORF17105P |
| 17105 | M | M.Sensp14178ORF17290P (100% identity) | CAGAG | M.SenSI196ORF17105P |
| 17110 | MFS transporter | |||
| 20110 | S8 family peptidase | |||
| 20115 | M | M.Sensp14178ORF19930P (100% identity) | CGGAAC | M.SenSI196ORF20115P |
| 20120 | R | Sensp14178ORF19930P (100% identity) | CGGAAC | SenSI196ORF20115P |
| 20125 | integrase arm-type DNA-binding domain-containing | |||