Helicobacter pylori GCT 97 |
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Putative Helicobacter pylori GCT 97 RM systems
Ref: Castro,F.L. unpublished
REBASE ref # 30183
Complete sequence: 1,656,646 bp
GenBank #: CP048599
REBASE acronym: HpyGCT97
Org_num: 39669
All begin G3M69_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2130 | RNA degradosome polyphosphate kinase | |||
| 2140 | S | S.HpyPO08ORF2270P (98% identity) | S.HpyGCT97ORF2145P | |
| 2145 | M | M.HpyCOL5ORF2130P (96% identity) | M.HpyGCT97ORF2145P | |
| 2150 | R | HpyGM7ORF2150P (92% identity) | HpyGCT97ORF2145P | |
| 2155 | motility associated factor glycosyltransferase | |||
| 2540 | DNA cytosine methyltransferase | |||
| 2545 | M | M.HpyU416ORF4300P (96% identity) | CRTANNNNNNNTG | M.HpyGCT97ORF2545P |
| 2550 | S | S.HpyIN1IV (93% identity) | CRTANNNNNNNTG | S.HpyGCT97ORF2545P |
| 2555 | R | HpyGM3ORF3890P (96% identity) | CRTANNNNNNNTG | HpyGCT97ORF2545P |
| 2560 | hydroxyethylthiazole kinase | |||
| 2845 | CAAX protease | |||
| 2850 | S | S.HpyKH38ORFD1P (97% identity) | CRTANNNNNNNTG | S.HpyGCT97ORF2840P |
| 2855 | outer membrane beta-barrel protein HofF | |||
| 5855 | M48 family metallopeptidase | |||
| 5860 | R | HpyGCT55ORFXP (97% identity) | HpyGCT97ORF5865P | |
| 5865 | M | M.HpyBR9XIV (94% identity) | M.HpyGCT97ORF5865P | |
| 5870 | S | S.HpyG63ORFOP (50% identity) | S.HpyGCT97ORF5865P | |
| 5875 | 46 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 165 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 170 | M | M.HpySWT08IX (97% identity) | GATC | M.HpyGCT97ORF170P |
| 175 | 334 aa hypothetical protein | |||
| 365 | sodium/proline symporter PutP | |||
| 370 | R | HpyU428IXP (98% identity) | GTSAC | HpyGCT97ORF375P |
| 375 | M | M.HpyH023VI (99% identity) | GTSAC | M.HpyGCT97ORF375P |
| 380 | DNA cytosine methyltransferase | |||
| 375 | site-specific DNA-methyltransferase | |||
| 380 | M | M2.HpyPO06ORF250P (99% identity) | CCTC | M2.HpyGCT97ORF380P |
| 385 | M | M1.HpyCOL110ORF260P (99% identity) | CCTC | M1.HpyGCT97ORF380P |
| 390 | agmatine deiminase | |||
| 1255 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.Hpy5337ORF3645P (99% identity) | TCGA | M.HpyGCT97ORF1260P |
| 1265 | 80 aa hypothetical protein | |||
| 1265 | 80 aa hypothetical protein | |||
| 1270 | R | HpyCOL206IVP (98% identity) | CCGG | HpyGCT97ORF1275P |
| 1275 | M | M.HpyGM3V (100% identity) | CCGG | M.HpyGCT97ORF1275P |
| 1280 | AAA domain-containing protein | |||
| 1510 | polysaccharide deacetylase | |||
| 1515 | R | HpyZ004VIIP (99% identity) | CTNAG | HpyGCT97ORF1520P |
| 1520 | M | M.HpyZ004VII (100% identity) | CTNAG | M.HpyGCT97ORF1520P |
| 1525 | 128 aa hypothetical protein | |||
| 2260 | ATP-dependent helicase | |||
| ??? | M | M.Hpy33CORF4670P (97% identity) | GTNNAC | M.HpyGCT97ORF2265P |
| 2270 | R | HpyP102VIIP (97% identity) | GTNNAC | HpyGCT97ORF2265P |
| 2275 | flagellar hook protein FlgE | |||
| 2530 | phosphatase PAP2 family protein | |||
| 2535 | R | HpyGM8ORF4220P (100% identity) | HpyGCT97ORF2540P | |
| 2540 | M | M.HpyGM8ORF4220P (100% identity) | M.HpyGCT97ORF2540P | |
| 2545 | type I restriction-modification system subunit | |||
| 3275 | HAD family hydrolase | |||
| 3280 | M | M.HpyT004I (98% identity) | CATG | M.HpyGCT97ORF3280P |
| 3285 | IceA2 protein | |||
| 4055 | elongation factor P | |||
| 4060 | M | M.HpyU302ORF870P (100% identity) | M.HpyGCT97ORF4060P | |
| 4065 | R | R1.HpyME04ORF860P (97% identity) | R1.HpyGCT97ORF4060P | |
| 4070 | R | R2.HpySP01ORF850P (97% identity) | R2.HpyGCT97ORF4060P | |
| 4075 | pseudaminic acid synthase | |||
| 4445 | DNA polymerase I | |||
| 4450 | S | S.HpyF004ORF7095P (64% identity) | S.HpyGCT97ORF4455P | |
| 4455 | RM | HpySP03ORF6830P (99% identity) | HpyGCT97ORF4455P | |
| 4460 | ComF family protein | |||
| 5100 | (Fe-S)-binding protein | |||
| 5105 | RM | Hpy24AORFOP (88% identity) | HpyGCT97ORF5105P | |
| 5110 | outer membrane protein | |||
| 5950 | DEAD/DEAH box helicase family protein | |||
| 5955 | RM | HpyI003ORF485P (80% identity) | HpyGCT97ORF5955P | |
| 5960 | 63 aa hypothetical protein | |||
| 6020 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| ??? | M | M.HpyC1119XI (97% identity) | GTAC | M.HpyGCT97ORF6025P |
| ??? | R | Hpy5016ORF7145P (94% identity) | GTAC | HpyGCT97ORF6025P |
| 6035 | M23 family metallopeptidase | |||
| 6335 | methyltransferase | |||
| ??? | M | M.HpySP322ORF1875P (99% identity) | TCNNGA | M.HpyGCT97ORF6340P |
| 6345 | R | HpyAR4XP (98% identity) | TCNNGA | HpyGCT97ORF6340P |
| 6350 | Laminin subunit alpha-2 precursor | |||
| 6450 | glycosyltransferase family 8 protein | |||
| ??? | M | M.HpyNCI57II (97% identity) | M.HpyGCT97ORF6460P | |
| 6470 | R | HpyU428VIP (97% identity) | GAAGA | HpyGCT97ORF6460P |
| 6475 | copper response regulator transcription factor | |||
| 6525 | carboxylating nicotinate-nucleotide | |||
| ??? | RM | HpyCRI6ORF2845P (84% identity) | HpyGCT97ORF6530P | |
| 6535 | site-specific DNA-methyltransferase | |||
| 6530 | N-6 DNA methylase | |||
| 6535 | M | M.HpyGM8VII (100% identity) | GANTC | M.HpyGCT97ORF6535P |
| 6540 | R | HpyH003VP (97% identity) | GANTC | HpyGCT97ORF6535P |
| 6545 | S41 family peptidase | |||
| 6600 | 144 aa hypothetical protein | |||
| ??? | M | M.HpyPE101XV (98% identity) | M.HpyGCT97ORF6605P | |
| 6610 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6940 | UDP-N-acetylmuramate dehydrogenase | |||
| ??? | R | HpyU201ORF6995P (90% identity) | GAATTC | HpyGCT97ORF6950P |
| 6950 | M | M.HpyPR07VIII (99% identity) | GAATTC | M.HpyGCT97ORF6950P |
| 6955 | glycosyltransferase family 8 protein | |||
| 7385 | energy transducer TonB | |||
| 7390 | M | M.HpyCOL107III (98% identity) | ATTAAT | M.HpyGCT97ORF7390P |
| 7395 | glycosyltransferase family 9 protein | |||
| 7400 | translational GTPase TypA | |||
| 7405 | M | M.HpyCO5II (99% identity) | ACNGT | M.HpyGCT97ORF7405P |
| ??? | R | HpyLIM5XIIP (91% identity) | ACNGT | HpyGCT97ORF7405P |
| 7415 | DNA cytosine methyltransferase | |||
| 7410 | GIY-YIG nuclease family protein | |||
| 7415 | M | M.HpySP14ORF2460P (98% identity) | ACGT | M.HpyGCT97ORF7415P |
| ??? | R | HpyME07ORF2335P (72% identity) | ACGT | HpyGCT97ORF7415P |
| 7425 | catalase | |||
| 7730 | replication initiation protein | |||
| 7735 | M | M.HpyC101VIII (77% identity) | M.HpyGCT97ORF7735P | |
| 7740 | CAAX protease | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5935 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyCOL107ORF7420P (96% identity) | M.HpyGCT97ORF5940P | |
| 5950 | R | HpyCOL307ORF7010P (94% identity) | HpyGCT97ORF5940P | |
| 5955 | class I SAM-dependent DNA methyltransferase | |||
| 7110 | NAD(P)H-dependent glycerol-3-phosphate | |||
| 7115 | M | M.HpyGCT17ORFFP (96% identity) | M.HpyGCT97ORF7115P | |
| 7120 | R | HpyU408ORF7520P (94% identity) | HpyGCT97ORF7115P | |
| 7125 | rod shape-determining protein MreC | |||
| 7170 | DNA/RNA non-specific endonuclease | |||
| 7175 | M | M.HpyCO10ORF7410P (97% identity) | M.HpyGCT97ORF7175P | |
| 7180 | R | HpyCO5ORF7335P (93% identity) | HpyGCT97ORF7175P | |
| 7185 | biotin synthase | |||