Helicobacter pylori GCT 43 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori GCT 43 RM systems
Ref: Castro,F.L. unpublished
REBASE ref # 30183
Complete sequence: 1,642,466 bp
GenBank #: CP048600
REBASE acronym: HpyGCT43
Org_num: 40402
All begin G3M68_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1415 | 60 aa hypothetical protein | |||
| 1420 | S | S.HpyI005VI (60% identity) | S.HpyGCT43ORF1425P | |
| 1425 | M | M.HpyCOL108ORF7460P (96% identity) | M.HpyGCT43ORF1425P | |
| 1430 | R | HpyBR6ORF7575P (94% identity) | HpyGCT43ORF1425P | |
| 1435 | M48 family metallopeptidase | |||
| 2395 | motility associated factor glycosyltransferase | |||
| ??? | R | HpyGM8ORF2330P (92% identity) | HpyGCT43ORF2410P | |
| 2410 | M | M.HpyCOL119IV (97% identity) | M.HpyGCT43ORF2410P | |
| 2415 | S | S.HpySP101ORF4085P (97% identity) | S.HpyGCT43ORF2410P | |
| 2425 | RNA degradosome polyphosphate kinase | |||
| 3720 | cadmium-translocating P-type ATPase | |||
| 3725 | S | S.Hpy1100ORFIP (90% identity) | S.HpyGCT43ORF3725P | |
| 3730 | outer membrane beta-barrel protein HofF | |||
| 6450 | phosphatase PAP2 family protein | |||
| 6455 | M | M.HpyBR1XIX (96% identity) | M.HpyGCT43ORF6455P | |
| 6460 | S | S.HpyS300ORF7330P (43% identity) | S.HpyGCT43ORF6455P | |
| 6465 | fucosyltransferase | |||
| 7165 | DUF3519 domain-containing protein | |||
| 7170 | S | S.HpyPO12ORF4200P (49% identity) | S.HpyGCT43ORF7170P | |
| 7175 | R | HpyBR5ORF4030P (95% identity) | HpyGCT43ORF7170P | |
| 7180 | hydroxyethylthiazole kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 250 | AAA domain-containing protein | |||
| 255 | M | M.HpyU311IV (98% identity) | CCGG | M.HpyGCT43ORF255P |
| ??? | R | HpyGH9IVP (98% identity) | CCGG | HpyGCT43ORF255P |
| 265 | site-specific DNA-methyltransferase | |||
| 260 | 198 aa hypothetical protein | |||
| 265 | M | M.HpyMT5105X (98% identity) | TCGA | M.HpyGCT43ORF265P |
| 270 | exodeoxyribonuclease VII large subunit | |||
| 1040 | cytochrome-c peroxidase | |||
| 1045 | R | HpySP406ORF7340P (99% identity) | HpyGCT43ORF1050P | |
| ??? | M | M2.HpyPE124ORF7390P (99% identity) | M1.HpyGCT43ORF1050P | |
| 1055 | M | M2.HpySP304ORF6990P (99% identity) | M2.HpyGCT43ORF1050P | |
| 1060 | addiction module antidote protein | |||
| 1105 | DNA polymerase I | |||
| 1110 | S | S.HpyCO4ORF6970P (60% identity) | S2.HpyGCT43ORF1120P | |
| 1115 | S | S1.HpyCO7ORF7080P (94% identity) | S1.HpyGCT43ORF1120P | |
| 1120 | RM | HpySP609ORF7070P (98% identity) | HpyGCT43ORF1120P | |
| 1125 | ComF family protein | |||
| 1340 | 177 aa hypothetical protein | |||
| 1345 | RM | Hpy1171ORF2655P (90% identity) | HpyGCT43ORF1345P | |
| 1350 | DEAD/DEAH box helicase family protein | |||
| 1520 | 67 aa hypothetical protein | |||
| 1525 | R | Hpy380ORF3425P (97% identity) | HpyGCT43ORF1525P | |
| 1530 | copper response regulator transcription factor | |||
| 1580 | carboxylating nicotinate-nucleotide | |||
| ??? | RM | HpySP609ORF6625P (91% identity) | HpyGCT43ORF1585P | |
| 1600 | site-specific DNA-methyltransferase | |||
| 1595 | DNA methyltransferase | |||
| 1600 | M | M.HpySP609VII (99% identity) | GANTC | M.HpyGCT43ORF1600P |
| 1605 | R | HpySP609VIIP (98% identity) | GANTC | HpyGCT43ORF1600P |
| 1610 | PDZ domain-containing protein | |||
| 2260 | M23 family metallopeptidase | |||
| ??? | R | HpyH012IVP (98% identity) | GTAC | HpyGCT43ORF2270P |
| ??? | M | M.HpyMT5118V (98% identity) | GTAC | M.HpyGCT43ORF2270P |
| 2275 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3125 | alpha-1,2-fucosyltransferase | |||
| 3130 | M | M.HpyBR14VI (97% identity) | GATC | M.HpyGCT43ORF3130P |
| 3135 | R | HpyU303VIIIP (97% identity) | GATC | HpyGCT43ORF3130P |
| 3145 | ACP S-malonyltransferase | |||
| 3340 | sodium/proline symporter PutP | |||
| 3345 | M | M2.HpySP609VP (100% identity) | M2.HpyGCT43ORF3345P | |
| 3350 | M | M1.HpySP609V (99% identity) | CCTC | M1.HpyGCT43ORF3345P |
| 3355 | agmatine deiminase | |||
| 4555 | site-specific DNA-methyltransferase | |||
| 4560 | M | M.HpySP609ORF7510P (82% identity) | M.HpyGCT43ORF4560P | |
| 4565 | glycosyltransferase family 8 protein | |||
| 4900 | (Fe-S)-binding protein | |||
| 4905 | RM | HpySP111ORF3035P (90% identity) | HpyGCT43ORF4905P | |
| 4910 | 470 aa hypothetical protein | |||
| 4990 | 3-5 exonuclease | |||
| ??? | M | M.HpyMT5135ORF3260P (97% identity) | CCNNGG | M.HpyGCT43ORF4995P |
| 5000 | R | HpySP609ORF3335P (99% identity) | CCNNGG | HpyGCT43ORF4995P |
| 5005 | acetone carboxylase subunit gamma | |||
| 5590 | HAD family hydrolase | |||
| 5595 | M | M.HpyCOL6I (98% identity) | CATG | M.HpyGCT43ORF5595P |
| 5600 | IceA2 protein | |||
| 6510 | acetyl-CoA carboxylase biotin carboxylase | |||
| 6515 | M | M.HpyPR08XIV (99% identity) | TCNNGA | M.HpyGCT43ORF6515P |
| 6520 | R | HpyU119XP (99% identity) | TCNNGA | HpyGCT43ORF6515P |
| 6525 | Laminin subunit alpha-2 precursor | |||
| 6910 | glycosyltransferase family 8 protein | |||
| 6915 | M | M.HpyU420VI (100% identity) | GAATTC | M.HpyGCT43ORF6915P |
| ??? | R | HpySP609VIP (89% identity) | GAATTC | HpyGCT43ORF6915P |
| 6925 | UDP-N-acetylmuramate dehydrogenase | |||
| 7135 | flagellar biosynthesis anti-sigma factor FlgM | |||
| ??? | M | M.HpySP609XIII (96% identity) | M.HpyGCT43ORF7140P | |
| 7145 | 144 aa hypothetical protein | |||
| 7325 | ATP-dependent helicase | |||
| ??? | M | M.HpySP609X (98% identity) | GTNNAC | M.HpyGCT43ORF7330P |
| 7335 | R | HpyU305XIIP (100% identity) | GTNNAC | HpyGCT43ORF7330P |
| 7340 | flagellar hook protein FlgE | |||
| 7425 | catalase | |||
| ??? | R | Hpy5033ORF7690P (91% identity) | ACGT | HpyGCT43ORF7435P |
| 7435 | M | M.HpyCOL102ORF2270P (99% identity) | ACGT | M.HpyGCT43ORF7435P |
| 7440 | GIY-YIG nuclease family protein | |||
| 7435 | DNA cytosine methyltransferase | |||
| 7440 | R | HpyGM7IIP (99% identity) | ACNGT | HpyGCT43ORF7445P |
| 7445 | M | M.HpySP506II (98% identity) | ACNGT | M.HpyGCT43ORF7445P |
| 7450 | translational GTPase TypA | |||
| 7455 | glycosyltransferase family 9 protein | |||
| 7460 | M | M.HpyNG17ORF2335P (97% identity) | M.HpyGCT43ORF7460P | |
| 7465 | HD family hydrolase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1345 | class I SAM-dependent DNA methyltransferase | |||
| 1350 | R | HpyAL4ORF7175P (95% identity) | HpyGCT43ORF1355P | |
| 1355 | M | M.HpyU005ORF7025P (93% identity) | M.HpyGCT43ORF1355P | |
| 1360 | ATP-dependent DNA helicase RecG | |||
| 4485 | biotin synthase | |||
| 4490 | R | HpySP609ORF7435P (96% identity) | HpyGCT43ORF4495P | |
| 4495 | M | M.HpySP206XV (94% identity) | M.HpyGCT43ORF4495P | |
| 4500 | DNA/RNA non-specific endonuclease | |||
| 4545 | rod shape-determining protein MreC | |||
| 4550 | R | HpyME45XIXP (94% identity) | HpyGCT43ORF4555P | |
| 4555 | M | M.HpyG001ORF6910P (93% identity) | M.HpyGCT43ORF4555P | |
| 4560 | site-specific DNA-methyltransferase | |||