Helicobacter pylori GCT 27 |
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Putative Helicobacter pylori GCT 27 RM systems
Ref: Castro,F.L. unpublished
REBASE ref # 30183
Complete sequence: 1,643,850 bp
GenBank #: CP048601
REBASE acronym: HpyGCT27
Org_num: 39662
All begin G3M67_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2450 | phosphatase PAP2 family protein | |||
| 2455 | M | M.HpyGE16V (95% identity) | M.HpyGCT27ORF2455P | |
| 2460 | S | S.HpyBR4ORF4120P (94% identity) | S.HpyGCT27ORF2455P | |
| 2465 | R | Hpy2012ORF2305P (95% identity) | HpyGCT27ORF2455P | |
| 2470 | hydroxyethylthiazole kinase | |||
| 2755 | CAAX protease | |||
| 2760 | S | S.HpyJ182ORF8005P (97% identity) | S.HpyGCT27ORF2750P | |
| 2765 | outer membrane beta-barrel protein HofF | |||
| 3640 | RNA degradosome polyphosphate kinase | |||
| 3650 | S | S.HpyK111ORF2230P (96% identity) | S.HpyGCT27ORF3655P | |
| 3655 | M | M.HpyME09ORF2335P (96% identity) | M.HpyGCT27ORF3655P | |
| 3660 | R | HpyAR1ORF2195P (91% identity) | HpyGCT27ORF3655P | |
| 3665 | motility associated factor glycosyltransferase | |||
| 5955 | M48 family metallopeptidase | |||
| 5960 | R | Hpy340ORF910P (95% identity) | HpyGCT27ORF5965P | |
| 5965 | M | M.HpyGM3ORF7200P (97% identity) | M.HpyGCT27ORF5965P | |
| 5970 | S | S.HpyF015ORF6420P (51% identity) | S.HpyGCT27ORF5965P | |
| 5975 | 127 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 240 | pseudaminic acid synthase | |||
| 245 | R | R2.HpyBR2ORF875P (98% identity) | R1.HpyGCT27ORF260P | |
| 250 | R | R1.HpyU305ORF875P (98% identity) | R2.HpyGCT27ORF260P | |
| 255 | 256 aa hypothetical protein | |||
| 260 | M | M1.HpyU202ORF865P (99% identity) | M.HpyGCT27ORF260P | |
| 265 | elongation factor P | |||
| 650 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 655 | M | M.Hpy015IV (97% identity) | GATC | M.HpyGCT27ORF655P |
| 660 | R | HpyGM9VP (99% identity) | GATC | HpyGCT27ORF655P |
| 670 | ACP S-malonyltransferase | |||
| 855 | sodium/proline symporter PutP | |||
| 860 | M | M.HpyBR2IV (99% identity) | CCTTC | M.HpyGCT27ORF860P |
| 865 | R | HpyPOR115XVIP (99% identity) | CCTTC | HpyGCT27ORF860P |
| 870 | DNA cytosine methyltransferase | |||
| 865 | restriction endonuclease | |||
| 870 | M | M1.HpyU305ORF255P (98% identity) | CCTC | M1.HpyGCT27ORF870P |
| 875 | site-specific DNA-methyltransferase | |||
| 1390 | glycosyltransferase family 8 protein | |||
| 1395 | M | M.HpyU406ORF7470P (98% identity) | M.HpyGCT27ORF1395P | |
| 1400 | site-specific DNA-methyltransferase | |||
| 1540 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| ??? | M | M.Hpy200831ORF2180P (98% identity) | GTAC | M.HpyGCT27ORF1545P |
| ??? | R | HpySP704VIIIP (93% identity) | GTAC | HpyGCT27ORF1545P |
| 1555 | M23 family metallopeptidase | |||
| 3225 | elongation factor 4 | |||
| 3230 | M | M.HpyU408ORF1720P (99% identity) | M.HpyGCT27ORF3230P | |
| 3235 | 133 aa hypothetical protein | |||
| 3890 | IceA2 protein | |||
| 3895 | M | M.HpyGCT85ORFCP (98% identity) | CATG | M.HpyGCT27ORF3895P |
| 3900 | HAD family hydrolase | |||
| 4390 | DNA polymerase I | |||
| 4395 | S | S.HpyMT5105XV (96% identity) | S.HpyGCT27ORF4400P | |
| 4400 | RM | HpyCOL303ORF6945P (98% identity) | HpyGCT27ORF4400P | |
| 4405 | ComF family protein | |||
| 4625 | 176 aa hypothetical protein | |||
| 4630 | RM | HpyT010XVI (94% identity) | HpyGCT27ORF4630P | |
| 4635 | 95 aa hypothetical protein | |||
| 4955 | AAA domain-containing protein | |||
| 4960 | M | M.HpyU434IV (100% identity) | CCGG | M.HpyGCT27ORF4960P |
| ??? | R | HpyH013VIIIP (97% identity) | CCGG | HpyGCT27ORF4960P |
| 4970 | 204 aa hypothetical protein | |||
| 4970 | 204 aa hypothetical protein | |||
| ??? | M | M.HpyUM023ORF3260P (96% identity) | TCGA | M.HpyGCT27ORF4975P |
| 4980 | exodeoxyribonuclease VII large subunit | |||
| 5790 | S41 family peptidase | |||
| ??? | R | HpyBR9ORF6280AP (75% identity) | HpyGCT27ORF5805P | |
| 5805 | M | M.HpySP323ORF6440P (100% identity) | M.HpyGCT27ORF5805P | |
| 5810 | N-6 DNA methylase | |||
| 5805 | site-specific DNA-methyltransferase | |||
| 5810 | RM | HpyME03ORF6785P (89% identity) | HpyGCT27ORF5810P | |
| 5815 | carboxylating nicotinate-nucleotide | |||
| 6130 | Laminin subunit alpha-2 precursor | |||
| 6135 | R | HpyU120ORF1220P (97% identity) | TCNNGA | HpyGCT27ORF6140P |
| 6140 | M | M.HpyPE140ORF5225P (99% identity) | TCNNGA | M.HpyGCT27ORF6140P |
| 6145 | acetyl-CoA carboxylase biotin carboxylase | |||
| 6455 | ATP-dependent helicase | |||
| ??? | M | M.HpySP601IX (96% identity) | GTNNAC | M.HpyGCT27ORF6460P |
| 6465 | R | HpySP205XIP (92% identity) | GTNNAC | HpyGCT27ORF6460P |
| 6470 | flagellar hook protein FlgE | |||
| 7000 | acetone carboxylase subunit gamma | |||
| 7005 | R | HpyPE17ORF3810P (98% identity) | CCNNGG | HpyGCT27ORF7010P |
| 7010 | M | M.HpyNG17IV (99% identity) | CCNNGG | M.HpyGCT27ORF7010P |
| 7015 | 3-5 exonuclease | |||
| 7145 | UDP-N-acetylmuramate dehydrogenase | |||
| ??? | R | HpyMT5125IXP (99% identity) | GAATTC | HpyGCT27ORF7155P |
| 7155 | M | M.HpyU420VI (100% identity) | GAATTC | M.HpyGCT27ORF7155P |
| 7160 | glycosyltransferase family 8 protein | |||
| 7225 | 144 aa hypothetical protein | |||
| ??? | M | M.HpyU003XVI (95% identity) | M.HpyGCT27ORF7230P | |
| 7235 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 7430 | 384 aa hypothetical protein | |||
| 7435 | M | M.HpyU411III (96% identity) | ATTAAT | M.HpyGCT27ORF7435P |
| 7440 | glycosyltransferase family 9 protein | |||
| 7445 | translational GTPase TypA | |||
| 7450 | M | M.HpyCRI2II (99% identity) | ACNGT | M.HpyGCT27ORF7450P |
| 7455 | R | HpySP304IIP (100% identity) | ACNGT | HpyGCT27ORF7450P |
| 7460 | DNA cytosine methyltransferase | |||
| 7455 | GIY-YIG nuclease family protein | |||
| 7460 | M | M.Hpy5024ORF8355P (98% identity) | M.HpyGCT27ORF7460P | |
| ??? | R | HpyPU010ORF2365P (72% identity) | HpyGCT27ORF7460P | |
| 7470 | catalase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1395 | DUF1887 family protein | |||
| ??? | M | M.HpyZ011ORF7820P (96% identity) | M.HpyGCT27ORF1400P | |
| 1410 | R | HpyLIM8ORF6585P (89% identity) | HpyGCT27ORF1400P | |
| 1415 | rod shape-determining protein MreC | |||
| 1460 | DNA/RNA non-specific endonuclease | |||
| 1465 | M | M.HpyBR22ORF7415P (94% identity) | M.HpyGCT27ORF1465P | |
| 1470 | R | HpyPE116ORF7580P (92% identity) | HpyGCT27ORF1465P | |
| 1475 | biotin synthase | |||
| 4635 | 95 aa hypothetical protein | |||
| 4640 | R | HpyU432ORF6810P (96% identity) | HpyGCT27ORF4645P | |
| 4645 | M | M.HpyPO18ORF7235P (96% identity) | M.HpyGCT27ORF4645P | |
| 4650 | ATP-dependent DNA helicase RecG | |||