Vibrio cincinnatiensis NCTC12012 |
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Putative Vibrio cincinnatiensis NCTC12012 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 3,800,816 bp
GenBank #: UHIE00000000 (NZ_UHIE00000000)
REBASE acronym: Vci12012
Org_num: 42839
All begin NCTC12012_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 642 | DNA-binding protein | |||
| 643 | M | M.Vci139882ORFEP (100% identity) | GTANNNNNNGTAY | M.Vci12012III |
| 644 | S | S.Vci139882ORFEP (100% identity) | GTANNNNNNGTAY | S.Vci12012III |
| 645 | Anticodon nuclease | |||
| 646 | R | R2.Vci139882ORFEP (100% identity) | GTANNNNNNGTAY | R1.Vci12012IIIP |
| 647 | R | R1.Vci139882ORFEP (100% identity) | GTANNNNNNGTAY | R2.Vci12012IIIP |
| 648 | phage integrase | |||
| 2829 | ATP-binding protein | |||
| 2830 | S | S.Vci139882ORFBP (100% identity) | CGANNNNNNNCTTC | S.Vci12012II |
| 2831 | M | M.Vci139882ORFBP (100% identity) | CGANNNNNNNCTTC | M.Vci12012II |
| 2832 | R | Vci139882ORFBP (100% identity) | CGANNNNNNNCTTC | Vci12012IIP |
| 2833 | 5-methylcytosine-specific restriction enzyme | |||
| 3125 | Uncharacterised protein | |||
| 3126 | R | Vci139882ORFAP (100% identity) | CYGANNNNNNCTG | Vci12012IP |
| 3127 | S | S.Vci139882ORFAP (100% identity) | CYGANNNNNNCTG | S.Vci12012I |
| 3128 | M | M.Vci139882ORFAP (100% identity) | CYGANNNNNNCTG | M.Vci12012I |
| 3129 | Uncharacterised protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 141 | transcriptional regulator, y4mF family | |||
| 142 | R | Vci207081ORFFP (88% identity) | Vci12012IVP | |
| 143 | M | M.Vci139882ORFDP (100% identity) | TCGCGA | M.Vci12012IV |
| 144 | Uncharacterized protein conserved in bacteria | |||
| 1196 | DamX protein | |||
| 1197 | M | M.VciF8054ORFCP (100% identity) | GATC | M.Vci12012Dam |
| 1198 | ribulose-phosphate 3-epimerase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2832 | type I restriction enzyme EcoKI subunit R | |||
| 2833 | R | Vci139882MrrP (97% identity) | Vci12012MrrP | |
| 2834 | transcriptional regulator, y4mF family | |||