Rikenella microfusus NCTC11190 |
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Putative Rikenella microfusus NCTC11190 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 2,945,869 bp
GenBank #: UGVL00000000 (NZ_UGVL00000000)
REBASE acronym: Rmi11190
Org_num: 42270
All begin NCTC11190_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2418 | Plasmid recombination enzyme | |||
| 2419 | S | S2.Bfr526ORF9460P (44% identity) | GAGNNNNNNNTGG | S5.Rmi11190ORF2424P |
| 2420 | Tyrosine recombinase XerC | |||
| ??? | S | S1.Rmi15922ORFAP (100% identity) | S4.Rmi11190ORF2424P | |
| 2421 | S | S2.Rmi15922ORFAP (85% identity) | S3.Rmi11190ORF2424P | |
| 2422 | S | S3.Rmi15922ORFAP (100% identity) | S2.Rmi11190ORF2424P | |
| 2423 | S | S1.Rmi11190ORF1865P (100% identity) | S1.Rmi11190ORF2424P | |
| 2424 | M | M.Rmi15922ORFAP (100% identity) | M.Rmi11190ORF2424P | |
| 2425 | R | Rmi15922ORFAP (100% identity) | Rmi11190ORF2424P | |
| 2426 | C | C.Rmi15922ORFAP (100% identity) | C.Rmi11190ORF2424P | |
| 2427 | MTH538 TIR-like domain (DUF1863) | |||
| 1229 | Uncharacterised protein | |||
| 1230 | M | M.Rmi15922ORFBP (100% identity) | AGCNNNNNGTA | M.Rmi11190I |
| 1231 | Uncharacterized protein conserved in bacteria | |||
| 1232 | S | S.Rmi15922ORFBP (100% identity) | AGCNNNNNGTA | S.Rmi11190I |
| 1233 | R | Rmi15922ORFBP (100% identity) | AGCNNNNNGTA | Rmi11190IP |
| 1234 | Uncharacterised protein | |||
| 1862 | MTH538 TIR-like domain (DUF1863) | |||
| 1863 | C | C.Rmi15922ORFAP (100% identity) | C.Rmi11190ORF1865P | |
| 1864 | R | Rmi15922ORFAP (100% identity) | Rmi11190ORF1865P | |
| 1865 | M | M.Rmi15922ORFAP (100% identity) | M.Rmi11190ORF1865P | |
| 1866 | S | S1.Rmi11190ORF2424P (100% identity) | S1.Rmi11190ORF1865P | |
| ??? | S | S2.Bfa513ORF12025P (22% identity) | S2.Rmi11190ORF1865P | |
| ??? | S | S5.Rmi11190ORF2424P (26% identity) | S3.Rmi11190ORF1865P | |
| ??? | S | S5.Rmi11190ORF2424P (50% identity) | S4.Rmi11190ORF1865P | |
| 1867 | Tyrosine recombinase XerC | |||
| 1868 | S | S2.BthBFG55ORF10995P (44% identity) | S5.Rmi11190ORF1865P | |
| 1869 | Plasmid recombination enzyme | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2439 | TaqI-like C-terminal specificity domain | |||
| 2440 | RM | Rmi11190ORF326P (54% identity) | Rmi11190ORF2440BP | |
| 2441 | RM | Rmi15922ORFDP (29% identity) | Rmi11190ORF2440AP | |
| 2442 | Uncharacterised protein | |||
| 325 | TaqI-like C-terminal specificity domain | |||
| 326 | RM | Rmi15922ORFDP (82% identity) | Rmi11190ORF326P | |
| 327 | ATP-dependent helicase HepA | |||
| 859 | Uncharacterised protein | |||
| 860 | M | M.Rmi15922ORFCP (86% identity) | M.Rmi11190ORF860P | |
| 861 | Uncharacterised protein | |||
| 2282 | Plasmid recombination enzyme | |||
| ??? | C | C.Rmi15922ORFGP (100% identity) | C.Rmi11190ORF2283P | |
| 2283 | M | M.Rmi15922ORFGP (100% identity) | M.Rmi11190ORF2283P | |
| 2284 | R | Rmi15922ORFGP (100% identity) | Rmi11190ORF2283P | |
| 2285 | Divergent AAA domain | |||