Ref: Doyle,S. unpublished

REBASE ref # 22501

Contig set: 2,182,674 bp

GenBank #: UGRA00000000 (NZ_UGRA00000000)

REBASE acronym: Ngo8254

Org_num: 41567

 

All begin NCTC8254_

Type I
ORF Gene Most similar Specificity Name
 
408 ADP-L-glycero-D-manno-heptose-6-epimerase
??? M M.NgoPID18ORF652P (99% identity) M.Ngo8254ORF410P
411 DNA-damage-inducible protein D
412 S S.NgoWNII (50% identity) GCANNNNNNNNTGC S1.Ngo8254ORF410P
413 S S2.NgoWSII (100% identity) GCANNNNNNNNTGC S2.Ngo8254ORF410P
414 R Ngo19853ORF11850P (99% identity) Ngo8254ORF410P
415 ATP-dependent protease ATP-binding protein
 
951 bifunctional 3,4-dihydroxy-2-butanone
952 M M.Ngo3648ORFEP (100% identity) GAGNNNNNTAC M.Ngo8254ORF952P
953 Uncharacterised protein
954 Uncharacterised protein
955 S S.NgoWSI (100% identity) GAGNNNNNTAC S.Ngo8254ORF952P
956 DNA-binding protein
957 R Ngo3648ORFEP (99% identity) GAGNNNNNTAC Ngo8254ORF952P
958 recombination factor protein RarA
Type II
ORF Gene Most similar Specificity Name
 
6 leucyl-tRNA synthetase
??? M M1.Ngo49226ORF35P (100% identity) GATC M1.Ngo8254ORF6P
??? M M.NgoWPORF8P (100% identity) M2.Ngo8254ORF6P
9 Uncharacterised protein
 
301 phenylalanyl-tRNA synthetase subunit alpha
302 V V.NgoWSORF391P (100% identity) V.Ngo8254ORF303P
??? M M.NgoWSORF391P (100% identity) M.Ngo8254ORF303P
305 R Npo18661ORFHP (100% identity) Ngo8254ORF303P
306 phenylalanyl-tRNA synthetase subunit beta
 
359 Transposase and inactivated derivatives
360 RM NgoWSORF450P (100% identity) GACNNNNNTGA Ngo8254ORF360P
361 S S.NgoFA19ORF100P (100% identity) GACNNNNNTGA S.Ngo8254ORF360P
362 secreted protein
 
366 uroporphyrinogen decarboxylase
367 H H.NgoWSORF459P (100% identity) H.Ngo8254ORF370P
??? R NgoWSORF459P (100% identity) GCSGC Ngo8254ORF370P
370 M M.NgoWSORF459P (100% identity) GCSGC M.Ngo8254ORF370P
371 Uncharacterised protein
 
720 phosphoribosylaminoimidazole carboxylase ATPase
721 R NgoWSORF1056P (100% identity) GCCGGC Ngo8254ORF722P
722 M M.NgoWLORF1156P (100% identity) GCCGGC M.Ngo8254ORF722P
723 anthranilate synthase component I
 
980 3-isopropylmalate dehydratase small
981 M M.NmeM395ORFKP (100% identity) GGNNCC M.Ngo8254ORF981P
??? R NgoWPORF778P (100% identity) GGNNCC Ngo8254ORF981P
984 3-isopropylmalate dehydrogenase
 
1559 phage replication initiation protein
1560 V V.NgoWSORF1801P (100% identity) V.Ngo8254ORF1563P
??? R Ngos1291ORF65P (100% identity) Ngo8254ORF1563P
??? M M.Ngos1291ORF65P (100% identity) M.Ngo8254ORF1563P
1564 Uncharacterised protein
 
1589 ATP-dependent DNA helicase
1590 R Ngo207IIP (100% identity) R1.Ngo8254ORF1592P
1591 R R2.Ngo206ORF9785P (94% identity) R2.Ngo8254ORF1592P
1592 M M2.Ngo207IIP (100% identity) M1.Ngo8254ORF1592P
1593 M M1.Ngo207II (100% identity) CCTC M2.Ngo8254ORF1592P
1594 ATP dependent DNA helicase
 
1602 excinuclease ABC subunit A
1603 R NgoWSORF259P (99% identity) CCGCGG Ngo8254ORF1604P
1604 M M.NgoWSORF259P (100% identity) CCGCGG M.Ngo8254ORF1604P
1605 type I restriction-modification system
 
1865 protein CysS
1866 R NgoWSORF2052P (100% identity) RGCGCY Ngo8254ORF1867P
1867 M M.NgoWFORF2310P (100% identity) RGCGCY M.Ngo8254ORF1867P
1868 GTPase ObgE
 
1974 transcriptional accessory protein Tex
1975 M M1.NgoWSIII (100% identity) GGTGA M1.Ngo8254ORF1975P
1976 M M2.NgoWSIII (100% identity) GGTGA M2.Ngo8254ORF1975P
1977 R NgoWSIIIP (100% identity) GGTGA Ngo8254ORF1975P
1978 glutamate permease
 
2076 ribosome recycling factor
2077 M M.Ngos1291ORF3515P (99% identity) GGCC M.Ngo8254ORF2077P
??? R NgoSW0236ORF9080P (100% identity) GGCC Ngo8254ORF2077P
2080 integral membrane protein
Type III
ORF Gene Most similar Specificity Name
 
1014 tRNA pseudouridine synthase B
??? M M.Nme25462ORF5410P (95% identity) M.Ngo8254ORF1016P
1017 R Ngo2679ORFAP (100% identity) Ngo8254ORF1016P
1018 L-lactate dehydrogenase
 
1110 C32 tRNA thiolase
1111 R NgoWSORF647P (100% identity) CCACC Ngo8254IP
1112 M M.NgoWSORF647P (99% identity) CCACC M.Ngo8254I
1113 peptidyl-prolyl cis-trans isomerase A