Helicobacter pylori NCTC13207 |
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Putative Helicobacter pylori NCTC13207 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 1,594,341 bp
GenBank #: UGHN00000000 (NZ_UGHN00000000)
REBASE acronym: Hpy13207
Org_num: 43570
All begin NCTC13207_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 542 | heavy-metal cation-transporting P-type | |||
| 543 | S | S.HpyID4ORF6720P (95% identity) | CRTANNNNNNNTAG | S.Hpy13207XIV |
| 544 | outer membrane protein | |||
| 836 | Uncharacterized protein conserved in bacteria | |||
| 837 | R | HpyI005ORF2170P (91% identity) | Hpy13207ORF838P | |
| 838 | M | M.Hpy1786ORF6685P (94% identity) | M.Hpy13207ORF838P | |
| ??? | S | S.HpyPO105ORF3835P (98% identity) | S.Hpy13207ORF838P | |
| 841 | polyphosphate kinase | |||
| 1346 | metal-dependent hydrolase | |||
| 1347 | R | HpyBG6ORF7110P (94% identity) | Hpy13207ORF1348P | |
| 1348 | M | M.HpyPOR110XIV (96% identity) | M.Hpy13207ORF1348P | |
| 1349 | S | S.HpyI015ORF7275P (97% identity) | S.Hpy13207ORF1348P | |
| 1350 | thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1536 | F4 | |||
| ??? | R | Hpy13207ORF1547P (100% identity) | Hpy13207ORF1538P | |
| 1538 | M | M.HpyC119ORF6765P (97% identity) | M.Hpy13207ORF1538P | |
| 1539 | mRNA interferase YafQ | |||
| 7 | adenine specific DNA methyltransferase | |||
| 8 | M | M.Hpy13207ORF1526P (100% identity) | GANTC | M.Hpy13207ORF8P |
| 9 | R | Hpy13207ORF1526P (100% identity) | GANTC | Hpy13207ORF8P |
| 10 | phosphorylase | |||
| 1545 | F4 | |||
| ??? | R | Hpy13207ORF1538P (100% identity) | Hpy13207ORF1547P | |
| 1547 | M | M.Hpy13207ORF1538P (96% identity) | M.Hpy13207ORF1547P | |
| 1548 | mRNA interferase YafQ | |||
| 154 | serine acetyl transferase | |||
| 155 | R | HpyCR38ORFDP (36% identity) | CATG | R1.Hpy13207IP |
| 156 | R | HpyPR07ORF5910P (55% identity) | CATG | R2.Hpy13207IP |
| 157 | M | M.HpySP606I (98% identity) | CATG | M.Hpy13207I |
| 158 | haloacid dehalogenase/epoxide hydrolase | |||
| 247 | flgM protein | |||
| ??? | M | M.HpyT001XIII (94% identity) | M.Hpy13207ORF248P | |
| 249 | Uncharacterised protein | |||
| 284 | Laminin subunit alpha-2 precursor | |||
| ??? | R | HpyT009XIIIP (98% identity) | TCNNGA | Hpy13207XIIP |
| 286 | M | M.HpyI019III (99% identity) | TCNNGA | M.Hpy13207XII |
| 287 | biotin carboxylase | |||
| 426 | ATP-dependent DNA helicase | |||
| 427 | M | M.HpyF007XI (97% identity) | GTNNAC | M.Hpy13207XI |
| 428 | R | HpyCOL104IXP (96% identity) | GTNNAC | Hpy13207XIP |
| 429 | flagellar hook protein FlgE | |||
| 657 | outer membrane protein 9 | |||
| ??? | RM | HpyME45ORF3465P (91% identity) | Hpy13207ORF658P | |
| 660 | anaerobic glycerol-3-phosphate | |||
| 795 | metalloendopeptidase like protein | |||
| ??? | R | Hpy21FORFFP (94% identity) | GTAC | Hpy13207XP |
| ??? | M | M.HpyGCT85ORFRP (98% identity) | GTAC | M.Hpy13207X |
| 799 | DNA polymerase III subunit beta | |||
| 815 | Uncharacterised protein | |||
| ??? | R | HpyLI06ORF2510P (71% identity) | ACGT | Hpy13207ORF818P |
| 817 | Type II restriction enzyme | |||
| 818 | M | M.HpyU404ORF2185P (99% identity) | ACGT | M.Hpy13207ORF818P |
| 819 | type II restriction endonuclease | |||
| 818 | type II DNA modification enzyme | |||
| 819 | R | HpyAR5IIP (100% identity) | ACNGT | Hpy13207IIP |
| 820 | M | M.HpyAL5XV (99% identity) | ACNGT | M.Hpy13207II |
| 821 | GTP-binding protein | |||
| 822 | type II adenine specific methyltransferase | |||
| 823 | M | M.HpyG005IV (97% identity) | ATTAAT | M.Hpy13207III |
| 824 | outer membrane protein HopK | |||
| 1009 | ATP-dependent Clp protease, ATP-binding subunit | |||
| 1010 | M | M.HpyU429V (99% identity) | CCGG | M.Hpy13207V |
| ??? | R | HpyG006VP (90% identity) | CCGG | Hpy13207VP |
| 1012 | exodeoxyribonuclease VII large subunit | |||
| 1171 | 2,3-cyclic-nucleotide 2-phosphodiesterase | |||
| ??? | M | M.HpyC010ORF900P (97% identity) | M.Hpy13207ORF1172P | |
| 1174 | restriction endonuclease | |||
| 1184 | alpha-1,2-fucosyltransferase | |||
| 1185 | M | M.HpyT008VII (98% identity) | GATC | M.Hpy13207IX |
| 1186 | R | HpyAL4VIIP (98% identity) | GATC | Hpy13207IXP |
| 1188 | malonyl CoA-acyl carrier protein transacylase | |||
| 1226 | SSS family proline:sodium (Na+) symporter | |||
| 1227 | M | M2.HpyH028ORF255P (95% identity) | CCTC | M2.Hpy13207VIP |
| 1228 | M | M1.HpyGE20IV (98% identity) | CCTC | M1.Hpy13207VI |
| 1229 | Agmatine deiminase | |||
| 1329 | ubiquinol-cytochrome c reductase cytochrome c1 | |||
| 1330 | R | HpyP110XIVP (99% identity) | TGCA | Hpy13207XIIIP |
| 1331 | M | M.HpyNCI34II (98% identity) | TGCA | M.Hpy13207XIII |
| 1332 | Uncharacterised protein | |||
| 1363 | type III restriction-modification system | |||
| 1364 | RM | HpyNP02ORF6910P (85% identity) | Hpy13207ORF1364P | |
| 1365 | Uncharacterised protein | |||
| 1384 | outer membrane protein (omp32) | |||
| 1385 | R | HpyP107IIIP (97% identity) | CCATC | Hpy13207IVP |
| 1386 | M | M2.HpyPE16VI (99% identity) | CCATC | M1.Hpy13207IV |
| ??? | M | M1.HpySW36V (78% identity) | CCATC | M2.Hpy13207IV |
| 1388 | Permease | |||
| 1472 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| ??? | R | HpyU416VIP (87% identity) | GAATTC | Hpy13207VIIIP |
| 1474 | M | M.Hpy13345VII (99% identity) | GAATTC | M.Hpy13207VIII |
| 1475 | lipopolysaccharide biosynthesis protein | |||
| 1501 | adenine-specific DNA methylase | |||
| 1502 | M | M2.HpyU009V (100% identity) | GAAGA | M1.Hpy13207VII |
| 1503 | M | M2.HpyNCI2aII (98% identity) | GAAGA | M2.Hpy13207VII |
| 1504 | R | HpyPO12VIIP (98% identity) | GAAGA | Hpy13207VIIP |
| 1505 | two-component regulator | |||
| 1515 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | HpySP706ORF6315P (88% identity) | Hpy13207ORF1516P | |
| 1518 | adenine specific DNA methyltransferase | |||
| 1517 | adenine specific DNA methyltransferase | |||
| 1518 | M | M.Hpy13207ORF8P (100% identity) | GANTC | M.Hpy13207ORF1518P |
| 1519 | R | Hpy13207ORF8P (100% identity) | GANTC | Hpy13207ORF1518P |
| 1520 | phosphorylase | |||
| 1525 | adenine specific DNA methyltransferase | |||
| 1526 | M | M.Hpy13207ORF8P (100% identity) | GANTC | M.Hpy13207ORF1526P |
| 1527 | R | Hpy13207ORF8P (100% identity) | GANTC | Hpy13207ORF1526P |
| 1528 | phosphorylase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 736 | Uncharacterised protein | |||
| ??? | M | M.HpyU005XI (93% identity) | CATAT | M.Hpy13207XV |
| ??? | R | Hpy6583ORF6255P (95% identity) | CATAT | Hpy13207XVP |
| 739 | 2-oxoglutarate-acceptor oxidoreductase subunit | |||
| 1360 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyJ182ORF40P (96% identity) | M.Hpy13207ORF1361P | |
| 1363 | R | HpySP17ORF7280P (95% identity) | Hpy13207ORF1361P | |
| 1364 | type IIS restriction-modification | |||
| 1486 | biotin synthase | |||
| 1487 | R | HpyI020ORF6505P (90% identity) | Hpy13207ORF1488P | |
| 1488 | M | M.HpyC002ORF6690P (95% identity) | M.Hpy13207ORF1488P | |
| 1489 | endonuclease | |||
| 1498 | rod shape-determining MreC family protein | |||
| 1499 | R | HpyH005ORF6755P (94% identity) | Hpy13207ORF1500P | |
| ??? | M | M.HpySP509ORF7705P (93% identity) | M.Hpy13207ORF1500P | |
| 1502 | modification methylase mjai | |||