Helicobacter pylori NCTC13094 |
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Putative Helicobacter pylori NCTC13094 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 1,610,054 bp
GenBank #: UGJP00000000 (NZ_UGJP00000000)
REBASE acronym: Hpy13094
Org_num: 43569
All begin NCTC13094_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 221 | Uncharacterized protein conserved in bacteria | |||
| ??? | R | HpyCOL210VIIIP (93% identity) | CCANNNNNNTC | Hpy13094ORF224P |
| 224 | M | M.HpySP310ORF2320P (96% identity) | CCANNNNNNTC | M.Hpy13094ORF224P |
| 225 | S | S.HpySP12ORF2370P (96% identity) | CCANNNNNNTC | S.Hpy13094ORF224P |
| 227 | polyphosphate kinase | |||
| 1102 | phosphatidic acid phosphatase | |||
| ??? | M | M.HpyCOL210ORF4275P (96% identity) | M.Hpy13094ORF1103P | |
| 1105 | S | S.HpyCOL210ORF4275P (99% identity) | S.Hpy13094ORF1103P | |
| 1106 | Type I restriction-modification system subunit | |||
| 742 | metal-dependent hydrolase | |||
| 743 | R | HpyISR5ORF7355P (94% identity) | CRTANNNNNNRTTA | Hpy13094XVP |
| 744 | M | M.HpyPE130ORF7425P (97% identity) | CRTANNNNNNRTTA | M.Hpy13094XV |
| 745 | S | S.HpyPE140VII (96% identity) | CRTANNNNNNRTTA | S.Hpy13094XV |
| 746 | thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7 | Uncharacterised protein | |||
| 8 | RM | HpySP103ORF3485P (90% identity) | Hpy13094ORF8P | |
| 9 | anaerobic glycerol-3-phosphate | |||
| 774 | outer membrane protein (omp32) | |||
| 775 | R | HpySP206IIIP (97% identity) | CCATC | Hpy13094IVP |
| 776 | M | M2.HpyT003IV (100% identity) | CCATC | M1.Hpy13094IV |
| ??? | M | M2.HpyME32VI (78% identity) | CCATC | M2.Hpy13094IV |
| 778 | Permease | |||
| 806 | HP1473-transformation associated protein | |||
| 807 | RM | HpyIS2ORF6885P (98% identity) | Hpy13094ORF807P | |
| 808 | S | S.Hpy030ORF7080P (67% identity) | S.Hpy13094ORF807P | |
| 809 | DNA polymerase I | |||
| 1183 | heavy-metal cation-transporting P-type | |||
| 1184 | M | M.HpyF010ORF2540P (99% identity) | M.Hpy13094ORF1184P | |
| 1185 | Uncharacterised protein | |||
| 1184 | site-specific DNA methylase | |||
| 1185 | R | HpyU001ORF2750P (100% identity) | Hpy13094ORF1185P | |
| 1186 | outer membrane protein | |||
| 1383 | type III R-M system methyltransferase | |||
| 1384 | M | M2.HpyLI01II (98% identity) | GAAGA | M1.Hpy13094VIII |
| ??? | M | M2.HpyU303VI (96% identity) | GAAGA | M2.Hpy13094VIII |
| ??? | R | HpySWT05ORF6645P (63% identity) | GAAGA | Hpy13094VIIIP |
| 1386 | two-component regulator | |||
| 864 | negative regulator of flagellin synthesis FlgM | |||
| ??? | M | M.HpyCOL210XVII (95% identity) | GCGC | M.Hpy13094ORF865P |
| 866 | Uncharacterised protein | |||
| 1396 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | HpyI018ORF6720P (92% identity) | Hpy13094ORF1397P | |
| 1399 | adenine specific DNA methyltransferase | |||
| 1398 | adenine specific DNA methyltransferase | |||
| 1399 | M | M.Hpy5024ORF790P (99% identity) | GANTC | M.Hpy13094IX |
| 1400 | R | HpyJ001VIIIP (97% identity) | GANTC | Hpy13094IXP |
| 1401 | carboxyl-terminal protease | |||
| 903 | Laminin subunit alpha-2 precursor | |||
| 904 | R | HpySP204VIIIP (98% identity) | TCNNGA | Hpy13094ORF905P |
| ??? | M | M.HpyCOL119XI (98% identity) | TCNNGA | M.Hpy13094ORF905P |
| 907 | biotin carboxylase | |||
| 1280 | acetone carboxylase subunit gamma | |||
| 1281 | R | HpyU409VIP (99% identity) | CCNNGG | Hpy13094VP |
| 1282 | M | M.HpyU422VI (99% identity) | CCNNGG | M.Hpy13094V |
| 1283 | polysaccharide biosynthesis protein | |||
| 180 | metalloendopeptidase like protein | |||
| ??? | R | HpyNCI22XP (96% identity) | GTAC | Hpy13094XIP |
| ??? | M | M.HpyGCT27ORF1545P (96% identity) | GTAC | M.Hpy13094XI |
| 184 | DNA polymerase III subunit beta | |||
| 199 | Catalase like protein | |||
| ??? | R | HpyI009ORF2280P (98% identity) | ACGT | Hpy13094ORF201P |
| 201 | M | M.HpyPE102ORF2295P (99% identity) | ACGT | M.Hpy13094ORF201P |
| 202 | type II restriction endonuclease | |||
| 201 | type II DNA modification enzyme | |||
| 202 | R | HpyT005IIP (99% identity) | ACNGT | Hpy13094IIP |
| ??? | M | M.HpyV002II (99% identity) | ACNGT | M.Hpy13094II |
| 204 | GTP-binding protein | |||
| 206 | Uncharacterised protein | |||
| 207 | M | M.HpyCOL210III (98% identity) | ATTAAT | M.Hpy13094III |
| 208 | outer membrane protein | |||
| 1547 | IceA2 protein | |||
| ??? | M | M.HpyME32I (98% identity) | CATG | M.Hpy13094I |
| 1549 | haloacid dehalogenase/epoxide hydrolase | |||
| 1044 | ATP-dependent DNA helicase | |||
| 1045 | M | M.HpyC011III (97% identity) | GTNNAC | M.Hpy13094XII |
| 1046 | R | HpySP103XP (99% identity) | GTNNAC | Hpy13094XIIP |
| 1047 | flagellar hook protein FlgE | |||
| 398 | ATP-dependent Clp protease, ATP-binding subunit | |||
| ??? | M | M.HpyL008II (98% identity) | CCGG | M.Hpy13094ORF399P |
| ??? | R | HpyGM8IVP (95% identity) | CCGG | Hpy13094ORF399P |
| 402 | Uncharacterised protein | |||
| 402 | Uncharacterised protein | |||
| 403 | M | M.HpyBR2XI (97% identity) | TCGA | M.Hpy13094XIII |
| 404 | exodeoxyribonuclease VII large subunit | |||
| 482 | pseudaminic acid synthase | |||
| ??? | R | R2.HpyCOL210ORF855P (97% identity) | R1.Hpy13094ORF488P | |
| ??? | R | R1.HpyPE109ORF855P (100% identity) | R2.Hpy13094ORF488P | |
| 487 | Uncharacterised protein | |||
| 569 | alpha-1,2-fucosyltransferase | |||
| 570 | M | M.HpyC122III (99% identity) | GATC | M.Hpy13094X |
| ??? | R | HpySP404IXP (98% identity) | GATC | Hpy13094XP |
| 574 | malonyl CoA-acyl carrier protein transacylase | |||
| 613 | SSS family proline:sodium (Na+) symporter | |||
| 614 | M | M.HpyCOL210VII (99% identity) | CCTTC | M.Hpy13094VII |
| 615 | R | HpySP807VP (98% identity) | CCTTC | Hpy13094VIIP |
| 616 | type II DNA modification enzyme | |||
| 615 | type II R-M system restriction endonuclease | |||
| 616 | M | M2.HpyCOL113VP (100% identity) | CCTC | M2.Hpy13094VIP |
| 617 | M | M1.HpyI014XVI (98% identity) | CCTC | M1.Hpy13094VI |
| 618 | Agmatine deiminase | |||
| 721 | elongation factor Ts | |||
| 722 | R | HpyI019VIIIP (99% identity) | TGCA | Hpy13094XIVP |
| 723 | M | M.HpyNCI25II (99% identity) | TGCA | M.Hpy13094XIV |
| 724 | Uncharacterised protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1123 | relaxase | |||
| 1124 | M | M.HpyNCI25ORFOP (10% identity) | M.Hpy13094ORF1124P | |
| 1125 | Uncharacterised protein | |||
| 1368 | biotin synthase | |||
| ??? | R | HpyH006ORF6735P (88% identity) | Hpy13094ORF1371P | |
| 1371 | M | M.HpyBR4ORF6580P (95% identity) | M.Hpy13094ORF1371P | |
| 1372 | endonuclease | |||
| 1381 | rod shape-determining MreC family protein | |||
| 1382 | R | HpyLI03XVIP (91% identity) | Hpy13094ORF1383P | |
| 1383 | M | M.HpyGRE043ORF6645P (94% identity) | M.Hpy13094ORF1383P | |
| 1384 | modification methylase mjai | |||
| 756 | ATP-dependent DNA helicase | |||
| 757 | M | M.HpyH028ORF7460P (95% identity) | M.Hpy13094ORF757P | |
| 758 | R | HpyNCI40ORFA1P (95% identity) | Hpy13094ORF757P | |