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Putative Helicobacter fennelliae NCTC13102 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 2,276,846 bp
GenBank #: UAWL00000000 (NZ_UAWL00000000)
REBASE acronym: Hfe13102
Org_num: 43564
All begin NCTC13102_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
999 | cation diffusion facilitator family transporter | |||
1000 | S | S2.Hfe13101ORF977P (62% identity) | CTAYNNNNNNNRTG | S.Hfe13102V |
1001 | CAAX protease | |||
1002 | M | M.CupORF1006P (97% identity) | CTAYNNNNNNNRTG | M.Hfe13102V |
1003 | R | Cup12264ORF1355P (96% identity) | CTAYNNNNNNNRTG | Hfe13102VP |
1004 | type I restriction-modification enzyme | |||
1006 | Uncharacterised protein | |||
1007 | S | S.Hbi43879ORF943P (66% identity) | GACNNNNNTAAA | S.Hfe13102IV |
1008 | M | M.HciORF2281P (98% identity) | GACNNNNNTAAA | M.Hfe13102IV |
1009 | DNA-binding transcriptional dual regulator Crp | |||
1992 | saccharopine dehydrogenase | |||
1993 | M | M.Hfe13101ORF1998P (99% identity) | M.Hfe13102ORF1993P | |
1994 | S | S.Hap1501ORF4715P (46% identity) | S.Hfe13102ORF1993P | |
1995 | thiamine biosynthesis protein (thi) | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
121 | oxidoreductase, aldo/keto reductase family | |||
122 | M | M.Hfe50ORF2137P (99% identity) | M.Hfe13102ORF122P | |
123 | AlwI restriction endonuclease family protein | |||
122 | Adenine-specific methyltransferase | |||
123 | R | Hfe11613IP (99% identity) | Hfe13102ORF123P | |
124 | type II methylase | |||
123 | AlwI restriction endonuclease family protein | |||
??? | M | M.Hfe50ORF2139P (99% identity) | M.Hfe13102ORF124P | |
126 | nodulation protein L | |||
137 | NADP-dependent L-serine/L-allo-threonine | |||
138 | R | Hfe13101VP (100% identity) | GGATG | Hfe13102IP |
139 | M | M.Hfe50ORF2159P (99% identity) | GGATG | M1.Hfe13102I |
140 | M | M.Hfe50ORF2160P (99% identity) | GGATG | M2.Hfe13102I |
141 | Uncharacterised protein | |||
142 | Phosphoglycolate phosphatase | |||
143 | M | M.Hfe13101ORF112P (100% identity) | M.Hfe13102ORF143P | |
??? | R | Hfe50ORF2164P (98% identity) | Hfe13102ORF143P | |
146 | SAM-dependent methyltransferase | |||
413 | methyltransferase | |||
414 | R | Cup11840VIP (95% identity) | Hfe13102ORF414P | |
415 | Methyl-directed repair DNA adenine methylase | |||
414 | type II restriction endonuclease | |||
415 | M | M.Hsp1616ORF1245P (72% identity) | GGCC | M.Hfe13102III |
416 | R | Hmu12714ORF1118P (81% identity) | GGCC | Hfe13102IIIP |
417 | Type II adenine specific DNA methyltransferase | |||
416 | Uncharacterised protein | |||
??? | M | M.Hfe50ORF1845P (96% identity) | M.Hfe13102ORF417P | |
419 | Uncharacterised protein | |||
598 | Uncharacterised protein | |||
599 | M | M.Hfe50ORF1632P (100% identity) | M.Hfe13102ORF599P | |
600 | Uncharacterised protein | |||
763 | GMP synthase | |||
764 | M | M.Hfe13101III (99% identity) | M.Hfe13102ORF764P | |
765 | R | Hfe13101IIIP (84% identity) | Hfe13102ORF764P | |
??? | site-specific DNA-methyltransferase | |||
765 | type II restriction endonuclease TdeIII | |||
??? | M | M.Hfe13101ORF1239P (99% identity) | M.Hfe13102ORF766P | |
767 | acyltransferase | |||
824 | methyl-accepting chemotaxis protein | |||
825 | M | M.Hfe13101VII (99% identity) | M.Hfe13102ORF825P | |
826 | R | Hci629ORFEP (98% identity) | Hfe13102ORF825P | |
827 | Uncharacterised protein | |||
1053 | Uncharacterised protein | |||
??? | M | M.Hma5501ORF389P (78% identity) | M.Hfe13102ORF1054P | |
??? | R | Hma5501ORF389P (91% identity) | Hfe13102ORF1054P | |
1057 | Uncharacterised protein | |||
1854 | Uncharacterised protein | |||
1855 | M | M.Hfe50ORF1575P (100% identity) | M.Hfe13102ORF1855P | |
1856 | Uncharacterised protein | |||
1866 | Protein involved in cell division | |||
1867 | M | M.Hfe13101IV (99% identity) | GTNNAC | M.Hfe13102II |
1868 | R | Hfe13101IVP (100% identity) | GTNNAC | Hfe13102IIP |
1869 | phage-related CUP0950-like protein | |||
1929 | Glutamate synthase [NADPH] small chain | |||
1930 | R | Hfe13101IIP (82% identity) | Hfe13102ORF1931P | |
1931 | M | M.Hfe50ORF927P (99% identity) | M.Hfe13102ORF1931P | |
1932 | Type II restriction enzyme M protein | |||
1973 | Uncharacterized protein conserved in archaea | |||
1974 | RM | Hfe50ORF975P (29% identity) | Hfe13102ORF1974CP | |
1975 | RM | Hfe50ORF975P (35% identity) | Hfe13102ORF1974BP | |
1976 | RM | Hfe11613ORF673AP (99% identity) | Hfe13102ORF1974AP | |
1977 | Integral membrane protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
1241 | Uncharacterised protein | |||
1242 | M | M.Hfe13102ORF1258P (34% identity) | M.Hfe13102ORF1242P | |
1243 | Uncharacterised protein | |||
1256 | Uncharacterised protein | |||
1257 | R | Hfe50ORF2430P (97% identity) | Hfe13102ORF1258P | |
1258 | M | M.Hfe13101ORF719P (98% identity) | M.Hfe13102ORF1258P | |
1259 | Uncharacterised protein | |||
1623 | Oleate hydratase | |||
1624 | R | Hfe13101ORF1625P (100% identity) | Hfe13102ORF1625P | |
1625 | M | M.Hfe13101ORF1625P (96% identity) | M.Hfe13102ORF1625P | |
1626 | 4-oxalocrotonate tautomerase enzyme family | |||
1784 | Uncharacterized conserved protein | |||
1785 | M | M.Hfe13101ORF1787P (98% identity) | M.Hfe13102ORF1785P | |
1786 | Predicted transcriptional regulator |