Escherichia coli NCTC9078 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli NCTC9078 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,430,304 bp
GenBank #: UFZO00000000 (NZ_UFZO00000000)
REBASE acronym: Eco9078
Org_num: 43829
All begin NCTC9078_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4796 | Uncharacterised protein | |||
| 4797 | M | M.EcoMS851ORF22160P (100% identity) | GTCANNNNNTTC | M.Eco9078II |
| 4798 | S | S.EcoMS851ORF22160P (100% identity) | GTCANNNNNTTC | S.Eco9078II |
| 4799 | membrane protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 122 | cytoplasmic protein | |||
| 123 | M | M.SflN101ORF24625P (100% identity) | M.Eco9078ORF123P | |
| 124 | plasmid segregation protein | |||
| 276 | cytoplasmic protein | |||
| 277 | M | M.EcoC9121ORF217P (100% identity) | M.Eco9078ORF277P | |
| 278 | YfdA | |||
| 722 | DamX protein | |||
| 723 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco9078DamP |
| 724 | ribulose-phosphate 3-epimerase | |||
| 850 | membrane protein | |||
| ??? | M | M.EcoQ4552ORF9480P (100% identity) | M.Eco9078ORF851P | |
| 852 | DNA-binding protein Fis | |||
| 2357 | phosphohydrolase | |||
| 2358 | M | M.Ecos135DcmP (100% identity) | CCWGG | M.Eco9078DcmP |
| 2359 | V | V.SflFF59DcmP (100% identity) | V.Eco9078DcmP | |
| 2360 | DMT superfamily transporter inner | |||
| 3049 | Uncharacterized conserved protein | |||
| 3050 | M | M.Sen58011ORF9805P (100% identity) | M.Eco9078ORF3050P | |
| 3051 | prophage protein | |||
| 4107 | LexA repressor | |||
| 4108 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco9078ORF4108P |
| 4109 | CPS-53 (KpLE1) prophage protein | |||
| 4393 | PglZ domain | |||
| 4394 | RM | KpnFF77ORF20885P (100% identity) | CANCATC | Eco9078I |
| 4395 | ATPase-like protein | |||
| 4402 | Uncharacterised protein | |||
| 4403 | M | M.KpnFF77ORF20840P (100% identity) | GGTACC | M.Eco9078III |
| 4404 | site-specific recombinase, phage integrase | |||
| 4792 | YjhS protein | |||
| 4793 | R | EcoMS851ORF22140P (100% identity) | Eco9078ORF4793P | |
| 4794 | endonuclease | |||
| 5114 | Lysis protein S | |||
| 5116 | M | M.Eco9055ORF1558P (100% identity) | M.Eco9078ORF5116P | |
| 5117 | lipoprotein | |||
| 5123 | LexA repressor | |||
| 5124 | M | M.EcosA33ORF3820P (100% identity) | GATC | M.Eco9078ORF5124P |
| 5125 | CPS-53 (KpLE1) prophage protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4793 | restriction endonuclease | |||
| 4794 | R | Ecows53McrBP (100% identity) | Eco9078McrBP | |
| 4795 | R | Ecows53McrCP (100% identity) | Eco9078McrCP | |
| 4796 | Uncharacterised protein | |||