Escherichia coli NCTC9028 |
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Putative Escherichia coli NCTC9028 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,247,991 bp
GenBank #: UASI00000000 (NZ_UASI00000000)
REBASE acronym: Eco9028
Org_num: 43799
All begin NCTC9028_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2940 | hydrolase | |||
| 2941 | R | PmeBin330ORFCP (100% identity) | GAGNNNNNGTTY | Eco9028IP |
| 2942 | RNase III inhibitor | |||
| 2943 | Uncharacterised protein | |||
| 2944 | S | S.EcosB2CORFEP (100% identity) | GAGNNNNNGTTY | S.Eco9028I |
| 2945 | M | M.EcosB2CORFEP (100% identity) | GAGNNNNNGTTY | M.Eco9028I |
| 2946 | ybl103 | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2480 | YfdA | |||
| 2481 | M | M.EcoSO172ORF25620P (100% identity) | SAY | M.Eco9028ORF2481P |
| 2482 | cytoplasmic protein | |||
| 2767 | recombination protein ninB from phage origin | |||
| 2768 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco9028ORF2768P |
| 2769 | protein ninx | |||
| 1238 | DamX protein | |||
| 1239 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco9028DamP |
| 1240 | ribulose-phosphate 3-epimerase | |||
| 1367 | membrane protein | |||
| 1368 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco9028ORF1368P |
| 1369 | DNA-binding protein Fis | |||
| 3985 | exonuclease from phage origin | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Eco9028ORF3986P | |
| 3987 | membrane protein | |||
| 4397 | CPS-53 (KpLE1) prophage protein | |||
| 4398 | M | M.SflFF35ORF16050P (99% identity) | GATC | M.Eco9028ORF4398P |
| 4399 | LexA repressor | |||
| 4619 | phosphohydrolase | |||
| 4620 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco9028DcmP |
| 4621 | V | V.SdySWHE2DcmP (100% identity) | V.Eco9028DcmP | |
| 4622 | DMT superfamily transporter inner | |||
| 4715 | Uncharacterised protein | |||
| 4716 | M | M.EcoR5ORF15805P (100% identity) | M.Eco9028ORF4716P | |
| 4717 | Uncharacterised protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 672 | Uncharacterised protein | |||
| 673 | R | SflN116ORF19490P (100% identity) | GAACC | Eco9028IIP |
| 674 | M | M.SflN116ORF19490P (100% identity) | GAACC | M.Eco9028II |
| 675 | helicase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 839 | transposase, IS110 family protein | |||
| 840 | R | EcoG8McrCP (100% identity) | Eco9028McrCP | |
| 841 | R | Kpn0718McrBP (100% identity) | Eco9028McrBP | |
| 842 | DNA-directed RNA polymerase, beta subunit/140 kD | |||