Escherichia coli NCTC8008 |
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Putative Escherichia coli NCTC8008 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,416,933 bp
GenBank #: UGEP00000000 (NZ_UGEP00000000)
REBASE acronym: Eco8008
Org_num: 43763
All begin NCTC8008_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 97 | cytoplasmic protein | |||
| 98 | M | M.Sso866ORF27155P (100% identity) | M.Eco8008ORF98P | |
| 99 | YfdA | |||
| 4641 | cytoplasmic protein | |||
| 4642 | M | M.EcoR29ORF15010P (99% identity) | M.Eco8008ORF4642P | |
| 4643 | YfdA | |||
| 5303 | DNA-binding protein Fis | |||
| 5304 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco8008III |
| 5305 | membrane protein | |||
| 5431 | ribulose-phosphate 3-epimerase | |||
| 5432 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco8008DamP |
| 5433 | DamX protein | |||
| 1351 | phosphohydrolase | |||
| 1352 | M | M.SspS13DcmP (100% identity) | CCWGG | M.Eco8008DcmP |
| 1353 | V | V.SsoSE61DcmP (100% identity) | V.Eco8008DcmP | |
| 1354 | DMT superfamily transporter inner | |||
| 1479 | lipoprotein | |||
| 1480 | M | M.SflJ17BORF23540P (100% identity) | A | M.Eco8008ORF1480P |
| 1485 | YjhS | |||
| 1565 | Bacterial protein of uncharacterised function | |||
| 1566 | M | M.EcoDEC6BORF2560P (100% identity) | M.Eco8008ORF1566P | |
| 1567 | Uncharacterised protein | |||
| 1958 | Exonuclease RNase T and DNA polymerase III | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Eco8008ORF1959P | |
| 1960 | membrane protein | |||
| 2272 | phage protein | |||
| 2278 | M | M.EcoUS12ORF13970P (100% identity) | A | M.Eco8008ORF2278P |
| 2279 | lipoprotein | |||
| 2533 | anti-adapter protein IraM | |||
| 2538 | M | M.SsoCS14ORF10750P (100% identity) | A | M.Eco8008ORF2538P |
| 2539 | lipoprotein | |||
| 3529 | Crossover junction | |||
| 3530 | M | M.EcoECO21ORF17780P (100% identity) | GATC | M.Eco8008ORF3530P |
| 3531 | CPS-53 (KpLE1) prophage protein | |||
| 3980 | Conjugal transfer protein TraD | |||
| 3981 | R | EcoM1D1ORF4353P (99% identity) | CYCGRG | Eco8008IP |
| 3982 | M | M.EcoM1D1ORF4353P (100% identity) | CYCGRG | M.Eco8008I |
| 3983 | Prophage integrase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 307 | Uncharacterised protein | |||
| 308 | R | Kpn0718ORF815P (100% identity) | ACCACC | Eco8008IIP |
| 309 | M | M.Kpn0718ORF815P (100% identity) | ACCACC | M.Eco8008II |
| 310 | serine protease | |||