Escherichia coli NCTC4169 |
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Putative Escherichia coli NCTC4169 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,910,387 bp
GenBank #: UGDY00000000 (NZ_UGDY00000000)
REBASE acronym: EcoC4169
Org_num: 43750
All begin NCTC4169_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3126 | 5-methylcytosine-specific restriction enzyme | |||
| 3128 | S | S.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | S.EcoC4169I |
| 3129 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.EcoC4169I |
| 3130 | R | Msa17ORFC2P (98% identity) | AACNNNNNNGTGC | EcoC4169IP |
| 3131 | methylated adenine and cytosine restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5919 | Uncharacterised protein | |||
| 5920 | M | M.EcoPnTigORFFP (100% identity) | M.EcoC4169ORF5920P | |
| 5921 | Uncharacterised protein | |||
| 502 | cytoplasmic protein | |||
| 503 | M | M.Sfl0030ORFCP (100% identity) | SAY | M.EcoC4169ORF503P |
| 504 | YfdA | |||
| 1676 | DNA-binding protein Fis | |||
| 1677 | M | M.EcosS1ORF18905P (100% identity) | ATGCAT | M.EcoC4169ORF1677P |
| 1678 | membrane protein | |||
| 1785 | ribulose-phosphate 3-epimerase | |||
| 1786 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC4169DamP |
| 1787 | DamX protein | |||
| 3077 | Uncharacterised protein | |||
| 3078 | M | M.KaeCRE8ORF15605P (100% identity) | M.EcoC4169ORF3078P | |
| 3079 | regulator | |||
| 4021 | recombination protein ninB from phage origin | |||
| 4022 | M | M.EcoGD31ORF15420P (100% identity) | GATC | M.EcoC4169ORF4022P |
| 4023 | NinF protein | |||
| 4748 | phosphohydrolase | |||
| 4749 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoC4169DcmP |
| 4750 | V | V.SsoSE61DcmP (100% identity) | V.EcoC4169DcmP | |
| 4751 | DMT superfamily transporter inner | |||
| 5172 | prophage protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.EcoC4169ORF5173P | |
| 5174 | membrane protein | |||
| 5613 | phage protein | |||
| 5619 | M | M.SsoL4094ORF17545P (100% identity) | A | M.EcoC4169ORF5619P |
| 5620 | lipoprotein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2115 | Uncharacterised protein | |||
| 2116 | R | Ecow264ORF380P (99% identity) | GTCTC | EcoC4169IIP |
| 2117 | M | M.EcoSO178ORF20185P (100% identity) | GTCTC | M.EcoC4169II |
| 2118 | AIPR protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3125 | R | SenHNK130McrCP (100% identity) | EcoC4169McrCP | |
| ??? | R | SenHNK130McrBP (100% identity) | EcoC4169McrBP | |
| 3128 | EcoKI restriction-modification system protein | |||
| 3130 | type I restriction enzyme EcoKI subunit R | |||
| 3131 | R | SenHNK130MrrP (100% identity) | EcoC4169MrrP | |
| 3132 | GTP-binding protein YjiA | |||