Escherichia coli NCTC4168 |
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Putative Escherichia coli NCTC4168 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,608,585 bp
GenBank #: UGGK00000000 (NZ_UGGK00000000)
REBASE acronym: Eco14168
Org_num: 43749
All begin NCTC4168_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4663 | methylated adenine and cytosine restriction | |||
| 4664 | R | Msa17ORFC2P (98% identity) | AACNNNNNNGTGC | Eco14168IP |
| 4665 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco14168I |
| 4666 | S | S.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | S.Eco14168I |
| 4668 | 5-methylcytosine-specific restriction enzyme | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5611 | cytoplasmic protein | |||
| 5612 | M | M.Sfl0030ORFCP (100% identity) | SAY | M.Eco14168ORF5612P |
| 5613 | YfdA | |||
| 434 | DamX protein | |||
| 435 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco14168DamP |
| 436 | ribulose-phosphate 3-epimerase | |||
| 543 | membrane protein | |||
| 544 | M | M.EcosS1ORF18905P (100% identity) | ATGCAT | M.Eco14168ORF544P |
| 545 | DNA-binding protein Fis | |||
| 2153 | prophage protein | |||
| ??? | M | M.EcoB1109aORFBP (100% identity) | GCCGGC | M.Eco14168ORFA2155P |
| 2155 | Type-2 restriction enzyme NgoMIV | |||
| ??? | DNA -methyltransferase | |||
| 2155 | R | EcoZ910ORF13770P (100% identity) | GCCGGC | Eco14168ORF2155P |
| 2156 | phage protein | |||
| 2203 | phosphohydrolase | |||
| 2204 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Eco14168DcmP |
| 2205 | V | V.SsoSE61DcmP (100% identity) | V.Eco14168DcmP | |
| 2206 | DMT superfamily transporter inner | |||
| 2693 | prophage protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Eco14168ORF2694P | |
| 2695 | membrane protein | |||
| 3136 | phage protein | |||
| 3137 | R | EcoZ910ORF13770P (100% identity) | GCCGGC | Eco14168ORF3137P |
| ??? | M | M.EcoB1109aORFBP (100% identity) | GCCGGC | M.Eco14168ORF3137P |
| 3139 | prophage protein | |||
| 3596 | ribonuclease (polynucleotidyl | |||
| 3597 | M | M.EcoR5ORF15805P (100% identity) | M.Eco14168ORF3597P | |
| 3598 | Uncharacterised protein | |||
| 3727 | site-specific recombinase | |||
| 3728 | M | M.Ecor024ORF8590P (100% identity) | GGTACC | M.Eco14168II |
| 3729 | R | EcoE1728ORF22495P (100% identity) | GGTACC | Eco14168IIP |
| 3730 | IS1 InsA protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4662 | GTP-binding protein YjiA | |||
| 4663 | R | SenHNK130MrrP (100% identity) | Eco14168MrrP | |
| 4664 | type I restriction enzyme EcoKI subunit R | |||
| 4666 | EcoKI restriction-modification system protein | |||
| ??? | R | SenHNK130McrBP (100% identity) | Eco14168McrBP | |
| 4669 | R | SenHNK130McrCP (100% identity) | Eco14168McrCP | |