Escherichia coli 2018.02.02CC |
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Putative Escherichia coli 2018.02.02CC RM systems
Ref: Yamamoto,Y. et al. mSphere (2020) In press
REBASE ref # 30114
Complete sequence: 4,574,715 bp
GenBank #: AP021896
REBASE acronym: Eco2CC
Org_num: 39276
All begin VEGS05_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 32800 | oxidoreductase | |||
| 32810 | R | Eco022CCORF32370P (100% identity) | Eco2CCORF32810P | |
| 32820 | S | S.EcoC1718ORF22485P (100% identity) | S.Eco2CCORF32810P | |
| 32830 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10620 | multidrug transporter | |||
| 10630 | V | V.EcoPSS16DcmP (100% identity) | V.Eco2CCDcmP | |
| 10640 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco2CCDcmP |
| 10650 | 231 aa hypothetical protein | |||
| 22550 | DNA-binding protein Fis | |||
| 22560 | M | M.EcoPSS16ORF4240P (100% identity) | ATGCAT | M.Eco2CCORF22560P |
| 22570 | acrEF/envCD operon repressor | |||
| 23710 | ribulose-phosphate 3-epimerase | |||
| 23720 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco2CCDamP |
| 23730 | cell division protein DamX | |||
| 31350 | ATP-dependent helicase | |||
| 31360 | RM | Eco022CCORF30960P (100% identity) | Eco2CCORF31360P | |
| 32870 | mcrBC 5-methylcytosine restriction system | |||
| 32880 | R | SflFF17ORF19275P (100% identity) | Eco2CCORF32880P | |
| 32890 | 216 aa hypothetical protein | |||
| 41030 | 64 aa hypothetical protein | |||
| 41040 | M | M.EcoSTEC413ORF8565P (100% identity) | M.Eco2CCORF41040P | |
| 41050 | phage holin, lambda family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 32850 | restriction methylase | |||
| 32860 | R | EcoYPE3McrBP (100% identity) | Eco2CCMcrBP | |
| 32870 | R | EcoYPE3McrCP (100% identity) | Eco2CCMcrCP | |
| 32880 | restriction endonuclease | |||