Escherichia coli 2018-11-3CC |
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Putative Escherichia coli 2018-11-3CC RM systems
Ref: Yamamoto,Y. et al. mSphere (2020) In press
REBASE ref # 30114
Complete sequence: 4,557,772 bp
GenBank #: AP021895
REBASE acronym: Eco3CC
Org_num: 39275
All begin VEGS11_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 33730 | 962 aa hypothetical protein | |||
| 33740 | R | Eco13CCORF33550P (100% identity) | Eco3CCORF33770P | |
| 33750 | 395 aa hypothetical protein | |||
| 33760 | S | S.Eco13CCORF33550P (100% identity) | S.Eco3CCORF33770P | |
| 33770 | M | M.Eco13CCORF33550P (100% identity) | M.Eco3CCORF33770P | |
| 33780 | repressor TnpA | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3620 | cell division protein DamX | |||
| ??? | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco3CCDamP |
| 3640 | ribulose-phosphate 3-epimerase | |||
| 4780 | acrEF/envCD operon repressor | |||
| 4790 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco3CCORF4790P |
| 4800 | DNA-binding protein Fis | |||
| 16970 | phosphohydrolase | |||
| 16980 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Eco3CCDcmP |
| 16990 | V | V.SflFF64DcmP (100% identity) | V.Eco3CCDcmP | |
| 17000 | multidrug transporter | |||
| 27890 | replication endonuclease from | |||
| 27900 | M | M.Eco13CCORF27730P (100% identity) | GATC | M.Eco3CCORF27900P |
| 27910 | 75 aa hypothetical protein | |||
| 37310 | repressor TnpA | |||
| 37320 | R | Eco3626ORF19670P (100% identity) | Eco3CCORF37320P | |
| 37330 | integrase | |||