Escherichia coli 38 |
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Putative Escherichia coli 38 RM systems
Ref: Nuesch-Inderbinen,M. et al. unpublished
REBASE ref # 30123
| Sequence length: | GenBank #: | |
| Chromosome: | 4,738,863 bp | CP048376 |
| plasmid p38_A-OXA140: | 86,996 bp | CP048377 |
REBASE acronym: Ecos38
Org_num: 39324
All begin GZS06_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5580 | IS1 family transposase | |||
| 5585 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | Ecos38ORF5595P |
| 5590 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.Ecos38ORF5595P |
| 5595 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.Ecos38ORF5595P |
| 5600 | transposase | |||
| 13485 | transcription factor | |||
| 13490 | M | M.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | M.Ecos38ORF13490P |
| 13495 | S | S.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | S.Ecos38ORF13490P |
| 13500 | DUF4433 domain-containing protein | |||
| 13505 | macro domain-containing protein | |||
| 13510 | R | Sbo49812IP (100% identity) | YTCANNNNNNGTTY | Ecos38ORF13490P |
| 13515 | M48 family metallopeptidase | |||
| plasmid p38_A-OXA140 | ||||
| 23150 | IS1 family transposase | |||
| 23155 | R | EcosR11ORF25685P (100% identity) | CAAYNNNNNNCTGG | Ecos38ORF23165P |
| 23160 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.Ecos38ORF23165P |
| 23165 | M | M.KpnKPA1ORF26345P (100% identity) | CAAYNNNNNNCTGG | M.Ecos38ORF23165P |
| 23170 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1780 | cell division protein DamX | |||
| 1785 | M | M.UbaC1152DamP (100% identity) | GATC | M.Ecos38DamP |
| 1790 | ribulose-phosphate 3-epimerase | |||
| 2405 | DUF2556 domain-containing protein | |||
| 2410 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Ecos38ORF2410P |
| 2415 | DNA-binding transcriptional regulator Fis | |||
| 8830 | phosphohydrolase | |||
| 8835 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Ecos38DcmP |
| 8840 | V | V.SsoSE61DcmP (100% identity) | V.Ecos38DcmP | |
| 8845 | drug/metabolite exporter YedA | |||
| 21570 | 345 aa hypothetical protein | |||
| 21575 | M | M.EcosE2ORF21575P (100% identity) | M.Ecos38ORF21575P | |
| 21580 | 68 aa hypothetical protein | |||
| plasmid p38_A-OXA140 | ||||
| 23045 | 73 aa hypothetical protein | |||
| 23050 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Ecos38ORF23050P |
| 23055 | 102 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12805 | isocitrate dehydrogenase | |||
| 12810 | R | EcosEC27McrCP (100% identity) | Ecos38McrCP | |
| 12815 | R | EcoteDMcrBP (100% identity) | Ecos38McrBP | |
| 12820 | recombinase family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14690 | replication endonuclease | |||
| 14695 | M | M.Sen663ORF16605P (100% identity) | GATC | M.Ecos38ORF14695P |
| 14700 | TraR/DksA family transcriptional regulator | |||