Escherichia coli 124 |
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Putative Escherichia coli 124 RM systems
Ref: Nuesch-Inderbinen,M. et al. unpublished
REBASE ref # 30123
| Sequence length: | GenBank #: | |
| Chromosome: | 4,731,258 bp | CP048344 |
| plasmid p124_A: | 97,111 bp | CP048345 |
| plasmid p124_C: | 28,663 bp | CP048347 |
REBASE acronym: Ecos124
Org_num: 39316
All begin GZS11_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5575 | IS1 family transposase | |||
| 5580 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | Ecos124ORF5590P |
| 5585 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.Ecos124ORF5590P |
| 5590 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.Ecos124ORF5590P |
| 5595 | transposase | |||
| 13570 | transcription factor | |||
| 13575 | M | M.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | M.Ecos124ORF13575P |
| 13580 | S | S.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | S.Ecos124ORF13575P |
| 13585 | DUF4433 domain-containing protein | |||
| 13590 | macro domain-containing protein | |||
| 13595 | R | Sbo49812IP (100% identity) | YTCANNNNNNGTTY | Ecos124ORF13575P |
| 13600 | M48 family metallopeptidase | |||
| plasmid p124_A | ||||
| 23215 | IS1 family transposase | |||
| 23220 | R | EcosR11ORF25685P (100% identity) | CAAYNNNNNNCTGG | Ecos124ORF23230P |
| 23225 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.Ecos124ORF23230P |
| 23230 | M | M.KpnKPA1ORF26345P (100% identity) | CAAYNNNNNNCTGG | M.Ecos124ORF23230P |
| 23235 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1780 | cell division protein DamX | |||
| 1785 | M | M.UbaC1152DamP (100% identity) | GATC | M.Ecos124DamP |
| 1790 | ribulose-phosphate 3-epimerase | |||
| 2410 | DUF2556 domain-containing protein | |||
| 2415 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Ecos124ORF2415P |
| 2420 | DNA-binding transcriptional regulator Fis | |||
| 8910 | phosphohydrolase | |||
| 8915 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Ecos124DcmP |
| 8920 | V | V.SsoSE61DcmP (100% identity) | V.Ecos124DcmP | |
| 8925 | drug/metabolite exporter YedA | |||
| 21555 | 345 aa hypothetical protein | |||
| 21560 | M | M.EcosE2ORF21575P (100% identity) | M.Ecos124ORF21560P | |
| 21565 | 68 aa hypothetical protein | |||
| plasmid p124_A | ||||
| 23120 | 73 aa hypothetical protein | |||
| 23125 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Ecos124ORF23125P |
| 23130 | 102 aa hypothetical protein | |||
| plasmid p124_C | ||||
| 23630 | 62 aa hypothetical protein | |||
| 23635 | M | M.Kpn2108ORF26890P (100% identity) | CTGAAG | M.Ecos124ORF23635P |
| 23640 | RM | Kpn2108ORF26890P (100% identity) | CTGAAG | Ecos124ORF23635P |
| 23645 | SAM-dependent DNA methyltransferase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12885 | isocitrate dehydrogenase | |||
| 12890 | R | EcosEC27McrCP (100% identity) | Ecos124McrCP | |
| 12895 | R | EcoteDMcrBP (100% identity) | Ecos124McrBP | |
| 12900 | recombinase family protein | |||